Andrew D Smith

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Gregory HannonCRUK, Cambridge University, New York Genome Center, Cold Spring Harbor LaboratoryPreverjeni e-poštni naslov na cruk.cam.ac.uk
Philip J UrenChief Technology Officer, Episona, Inc.Preverjeni e-poštni naslov na episona.com
Antoine MolaroInsititue of Genetics, Reproduction and Development (iGReD)Preverjeni e-poštni naslov na uca.fr
Qiang SongUniversity of Southern CaliforniaPreverjeni e-poštni naslov na usc.edu
Zhenyu XuanUniversity of Texas at DallasPreverjeni e-poštni naslov na utdallas.edu
Meng ZhouBayerPreverjeni e-poštni naslov na bayer.com
Emad Bahrami-SamaniStaff Bioinformatics Scientist at Exact SciencesPreverjeni e-poštni naslov na exactsciences.com
Ben DecatoAmgenPreverjeni e-poštni naslov na amgen.com
Bing Ren, Ph.D.University of California, San DiegoPreverjeni e-poštni naslov na ucsd.edu
Pavel SumazinBaylor College of medicinePreverjeni e-poštni naslov na bcm.edu
Jianghan QuVeracyte, Inc.Preverjeni e-poštni naslov na veracyte.com
Dat VoTitus Regional Medical CenterPreverjeni e-poštni naslov na titusregional.com
Matt DeanUniversity of Southern CaliforniaPreverjeni e-poštni naslov na usc.edu
Simon KnottResearch Scientist, Cedars-Sinai Medical CenterPreverjeni e-poštni naslov na cshl.edu
Alan Horsager, Ph.D.President & CEO, Duet BioTherapeuticsPreverjeni e-poštni naslov na duettx.com
Tae Hoon KimDepartment of Biological Sciences, University of Texas DallasPreverjeni e-poštni naslov na utdallas.edu
Victor LobanenkovChief, Molecular Pathology Section, Division of Intramural Research, NIAID, NIHPreverjeni e-poštni naslov na niaid.nih.gov
Christine VogelNew York University, Center for Genomics and Systems Biology, Dept. of BiologyPreverjeni e-poštni naslov na nyu.edu
Charles M. PerouUniversity of North Carolina at Chapel HillPreverjeni e-poštni naslov na med.unc.edu
Mark DonoghueMSKCCPreverjeni e-poštni naslov na mskcc.org

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Andrew D Smith

Professor of Biological Sciences, University of Southern California

Preverjeni e-poštni naslov na smithlabresearch.org - Domača stran

Computational Biology Bioinformatics Epigenetics Genomics


Naslov Razvrsti po navedbah Razvrsti po letniku Razvrsti po naslovu	Navedeno Navedeno	Leto
Analysis of the vertebrate insulator protein CTCF-binding sites in the human genome TH Kim, ZK Abdullaev, AD Smith, KA Ching, DI Loukinov, RD Green, ... Cell 128 (6), 1231-1245, 2007	1264	2007
An integrative genomics approach identifies Hypoxia Inducible Factor-1 (HIF-1)-target genes that form the core response to hypoxia Y Benita, H Kikuchi, AD Smith, MQ Zhang, DC Chung, RJ Xavier Nucleic acids research 37 (14), 4587-4602, 2009	585	2009
Using quality scores and longer reads improves accuracy of Solexa read mapping AD Smith, Z Xuan, MQ Zhang BMC bioinformatics 9, 1-8, 2008	462	2008
A model of breast cancer heterogeneity reveals vascular mimicry as a driver of metastasis E Wagenblast, M Soto, S Gutiérrez-Ángel, CA Hartl, AL Gable, AR Maceli, ... Nature 520 (7547), 358-362, 2015	451	2015
Sperm methylation profiles reveal features of epigenetic inheritance and evolution in primates A Molaro, E Hodges, F Fang, Q Song, WR McCombie, GJ Hannon, ... Cell 146 (6), 1029-1041, 2011	425	2011
A reference methylome database and analysis pipeline to facilitate integrative and comparative epigenomics Q Song, B Decato, EE Hong, M Zhou, F Fang, J Qu, T Garvin, M Kessler, ... PloS one 8 (12), e81148, 2013	407	2013
Improvements to the ARTIC multiplex PCR method for SARS-CoV-2 genome sequencing using nanopore JR Tyson, P James, D Stoddart, N Sparks, A Wickenhagen, G Hall, ... BioRxiv, 2020	367	2020
Directional DNA methylation changes and complex intermediate states accompany lineage specificity in the adult hematopoietic compartment E Hodges, A Molaro, CO Dos Santos, P Thekkat, Q Song, PJ Uren, J Park, ... Molecular cell 44 (1), 17-28, 2011	356	2011
Predicting the molecular complexity of sequencing libraries T Daley, AD Smith Nature methods 10 (4), 325-327, 2013	353	2013
Before it gets started: regulating translation at the 5′ UTR PR Araujo, K Yoon, D Ko, AD Smith, M Qiao, U Suresh, SC Burns, ... International Journal of Genomics 2012 (1), 475731, 2012	323	2012
Site identification in high-throughput RNA–protein interaction data PJ Uren, E Bahrami-Samani, SC Burns, M Qiao, FV Karginov, E Hodges, ... Bioinformatics 28 (23), 3013-3020, 2012	321	2012
The maize methylome influences mRNA splice sites and reveals widespread paramutation-like switches guided by small RNA M Regulski, Z Lu, J Kendall, MTA Donoghue, J Reinders, V Llaca, ... Genome research 23 (10), 1651-1662, 2013	300	2013
Falco: high-speed FastQC emulation for quality control of sequencing data G de Sena Brandine, AD Smith F1000Research 8, 1874, 2021	295	2021
High definition profiling of mammalian DNA methylation by array capture and single molecule bisulfite sequencing E Hodges, AD Smith, J Kendall, Z Xuan, K Ravi, M Rooks, MQ Zhang, ... Genome research 19 (9), 1593-1605, 2009	281	2009
An evolutionarily conserved gene family encodes proton-selective ion channels YH Tu, AJ Cooper, B Teng, RB Chang, DJ Artiga, HN Turner, EM Mulhall, ... Science 359 (6379), 1047-1050, 2018	275	2018
Molecular characterization of the transition from acute to chronic kidney injury following ischemia/reperfusion J Liu, S Kumar, E Dolzhenko, GF Alvarado, J Guo, C Lu, Y Chen, M Li, ... JCI insight 2 (18), e94716, 2017	271	2017
Aberrant sperm DNA methylation predicts male fertility status and embryo quality KI Aston, PJ Uren, TG Jenkins, A Horsager, BR Cairns, AD Smith, ... Fertility and sterility 104 (6), 1388-1397. e5, 2015	216	2015
Diverse endonucleolytic cleavage sites in the mammalian transcriptome depend upon microRNAs, Drosha, and additional nucleases FV Karginov, S Cheloufi, MMW Chong, A Stark, AD Smith, GJ Hannon Molecular cell 38 (6), 781-788, 2010	216	2010
Updates to the RMAP short-read mapping software AD Smith, WY Chung, E Hodges, J Kendall, G Hannon, J Hicks, Z Xuan, ... Bioinformatics 25 (21), 2841-2842, 2009	216	2009
Conserved and divergent features of mesenchymal progenitor cell types within the cortical nephrogenic niche of the human and mouse kidney NO Lindström, J Guo, AD Kim, T Tran, Q Guo, GDS Brandine, A Ransick, ... Journal of the American Society of Nephrology 29 (3), 806-824, 2018	206	2018

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