Članki z zahtevami za javni dostop - Jarno Niklas AlankoVeč o tem
Na voljo nekje: 18
Themisto: a scalable colored k-mer index for sensitive pseudoalignment against hundreds of thousands of bacterial genomes
JN Alanko, J Vuohtoniemi, T Mäklin, SJ Puglisi
Bioinformatics 39 (Supplement_1), i260-i269, 2023
Zahteve: Academy of Finland
Regular languages meet prefix sorting
J Alanko, G D'Agostino, A Policriti, N Prezza
Proceedings of the Fourteenth Annual ACM-SIAM Symposium on Discrete …, 2020
Zahteve: Government of Italy
Bacterial genomic epidemiology with mixed samples
T Mäklin, T Kallonen, J Alanko, Ø Samuelsen, K Hegstad, V Mäkinen, ...
Microbial genomics 7 (11), 000691, 2021
Zahteve: Academy of Finland, European Commission, Research Council of Norway
Small Searchable κ-Spectra via Subset Rank Queries on the Spectral Burrows-Wheeler Transform
JN Alanko, SJ Puglisi, J Vuohtoniemi
SIAM Conference on Applied and Computational Discrete Algorithms (ACDA23 …, 2023
Zahteve: US National Institutes of Health, Academy of Finland
Tunneling on wheeler graphs
J Alanko, T Gagie, G Navarro, LS Benkner
2019 Data Compression Conference (DCC), 122-131, 2019
Zahteve: German Research Foundation, European Commission
Eulertigs: minimum plain text representation of k-mer sets without repetitions in linear time
S Schmidt, JN Alanko
Algorithms for Molecular Biology 18 (1), 5, 2023
Zahteve: US National Institutes of Health, Academy of Finland, European Commission
Finding all maximal perfect haplotype blocks in linear time
J Alanko, H Bannai, B Cazaux, P Peterlongo, J Stoye
Algorithms for Molecular Biology 15, 1-7, 2020
Zahteve: Agence Nationale de la Recherche
Matchtigs: minimum plain text representation of k-mer sets
S Schmidt, S Khan, JN Alanko, GE Pibiri, AI Tomescu
Genome Biology 24 (1), 136, 2023
Zahteve: Academy of Finland, European Commission
Algorithms and complexity on indexing elastic founder graphs
M Equi, T Norri, J Alanko, B Cazaux, A Tomescu, V Mäkinen
32nd International Symposium on Algorithms and Computation (ISAAC 2021), 2021
Zahteve: Academy of Finland, European Commission
Buffering updates enables efficient dynamic de bruijn graphs
J Alanko, B Alipanahi, J Settle, C Boucher, T Gagie
Computational and structural biotechnology journal 19, 4067-4078, 2021
Zahteve: US National Science Foundation, US National Institutes of Health, Natural …
Syotti: scalable bait design for DNA enrichment
JN Alanko, IB Slizovskiy, D Lokshtanov, T Gagie, NR Noyes, C Boucher
Bioinformatics 38 (Supplement_1), i177-i184, 2022
Zahteve: US National Science Foundation, US National Institutes of Health, Natural …
A framework for space-efficient read clustering in metagenomic samples
J Alanko, F Cunial, D Belazzougui, V Mäkinen
BMC bioinformatics 18, 49-60, 2017
Zahteve: Academy of Finland
An Experimental Performance Assessment of Galileo OSNMA
T Hammarberg, JMV García, JN Alanko, MZH Bhuiyan
Sensors 24 (2), 404, 2024
Zahteve: European Commission
FGI-OSNMA: An Open Source Implementation of Galileo’s Open Service Navigation Message Authentication
T Hammarberg, JMV García, JN Alanko, MZH Bhuiyan
Proceedings of the 36th International Technical Meeting of the Satellite …, 2023
Zahteve: European Commission
Subset wavelet trees
JN Alanko, E Biagi, SJ Puglisi, J Vuohtoniemi
21st International Symposium on Experimental Algorithms (SEA 2023), 4: 1-4: 14, 2023
Zahteve: Academy of Finland
Longest Common Prefix Arrays for Succinct k-Spectra
JN Alanko, E Biagi, SJ Puglisi
International Symposium on String Processing and Information Retrieval, 1-13, 2023
Zahteve: Academy of Finland
HaploBlocks: efficient detection of positive selection in large population genomic datasets
B Kirsch-Gerweck, L Bohnenkämper, MT Henrichs, JN Alanko, H Bannai, ...
Molecular biology and evolution 40 (3), msad027, 2023
Zahteve: European Commission, Federal Ministry of Education and Research, Germany
Finimizers: Variable-length bounded-frequency minimizers for k-mer sets
JN Alanko, E Biagi, SJ Puglisi
bioRxiv, 2024.02. 19.580943, 2024
Zahteve: Academy of Finland
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