Anshul Kundaje

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Soavtorji

Avanti ShrikumarStanford UniversityPreverjeni e-poštni naslov na stanford.edu
William GreenleafAssociate Professor of Genetics, Stanford UniversityPreverjeni e-poštni naslov na stanford.edu
Michael SnyderStanford UniversityPreverjeni e-poštni naslov na stanford.edu
Peyton GreensideStanford UniversityPreverjeni e-poštni naslov na stanford.edu
Georgi K. MarinovnonePreverjeni e-poštni naslov na stanford.edu
Howard Y. ChangChief Scientific Officer, AmgenPreverjeni e-poštni naslov na stanford.edu
Anna ShcherbinaStanford UniversityPreverjeni e-poštni naslov na stanford.edu
Nasa Sinnott-ArmstrongFred Hutchinson Cancer CenterPreverjeni e-poštni naslov na fredhutch.org
Michael WainbergProsserman Centre for Population Health Research, Lunenfeld-Tanenbaum Research Institute, TorontoPreverjeni e-poštni naslov na stanford.edu
Alexandro E TrevinoEnable MedicinePreverjeni e-poštni naslov na enablemedicine.com
Thomas QuertermousProfessor of Medicine, Stanford UniversityPreverjeni e-poštni naslov na stanford.edu
Michael C BassikAssistant Professor of Genetics, Stanford UniversityPreverjeni e-poštni naslov na stanford.edu
William Stafford NobleProfessor of Genome Sciences, University of WashingtonPreverjeni e-poštni naslov na uw.edu
Akshay BalsubramaniPreverjeni e-poštni naslov na akshay.bio
Ewan BirneyDirector, EMBL-EBIPreverjeni e-poštni naslov na ebi.ac.uk
Manolis KellisProfessor of Computer Science, MIT and Broad InstitutePreverjeni e-poštni naslov na mit.edu
Alan P BoyleAssociate Professor, University of MichiganPreverjeni e-poštni naslov na umich.edu
Jason ErnstProfessor, University of California, Los AngelesPreverjeni e-poštni naslov na ucla.edu
Serafim BatzoglouSeerPreverjeni e-poštni naslov na seer.bio
M. Ryan CorcesAssistant Investigator, Gladstone InstitutesPreverjeni e-poštni naslov na gladstone.ucsf.edu

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Anshul Kundaje

Associate Professor, Dept. of Genetics, Dept. of Computer Science, Stanford University

Preverjeni e-poštni naslov na stanford.edu - Domača stran

Computational Biology Bioinformatics Genomics Sequencing Applied Machine Learning


Naslov Razvrsti po navedbah Razvrsti po letniku Razvrsti po naslovu	Navedeno Navedeno	Leto
An integrated encyclopedia of DNA elements in the human genome EP Consortium Nature 489 (7414), 57–74, 2012	17577	2012
Integrative analysis of 111 reference human epigenomes Roadmap Epigenomics Consortium Integrative analysis coordination Kundaje ... Nature 518 (7539), 317-330, 2015	6405*	2015
Learning important features through propagating activation differences A Shrikumar, P Greenside, A Kundaje International conference on machine learning, 3145-3153, 2017	5668*	2017
ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia SG Landt, GK Marinov, A Kundaje, P Kheradpour, F Pauli, S Batzoglou, ... Genome research 22 (9), 1813-1831, 2012	2347	2012
Opportunities and obstacles for deep learning in biology and medicine T Ching, DS Himmelstein, BK Beaulieu-Jones, AA Kalinin, BT Do, ... Journal of the royal society interface 15 (141), 20170387, 2018	2305	2018
An improved ATAC-seq protocol reduces background and enables interrogation of frozen tissues MR Corces, AE Trevino, EG Hamilton, PG Greenside, ... Nature methods 14 (10), 959-962, 2017	2129	2017
A comparative encyclopedia of DNA elements in the mouse genome F Yue, Y Cheng, A Breschi, J Vierstra, W Wu, T Ryba, R Sandstrom, Z Ma, ... Nature 515 (7527), 355-364, 2014	2020	2014
Architecture of the human regulatory network derived from ENCODE data MB Gerstein, A Kundaje, M Hariharan, SG Landt, KK Yan, C Cheng, ... Nature 489 (7414), 91-100, 2012	1724	2012
Wilds: A benchmark of in-the-wild distribution shifts PW Koh, S Sagawa, H Marklund, SM Xie, M Zhang, A Balsubramani, ... International conference on machine learning, 5637-5664, 2021	1589	2021
Expanded encyclopaedias of DNA elements in the human and mouse genomes JE Moore, MJ Purcaro, HE Pratt, CB Epstein, N Shoresh, J Adrian, T Kawli, ... Nature 583 (7818), 699-710, 2020	1573	2020
The ENCODE blacklist: identification of problematic regions of the genome HM Amemiya, A Kundaje, AP Boyle Scientific reports 9 (1), 9354, 2019	1514	2019
A user's guide to the encyclopedia of DNA elements (ENCODE) ENCODE Project Consortium PLoS Biol 9 (4), e1001046, 2011	1499	2011
Lineage-specific and single-cell chromatin accessibility charts human hematopoiesis and leukemia evolution MR Corces, JD Buenrostro, B Wu, PG Greenside, SM Chan, JL Koenig, ... Nature genetics 48 (10), 1193-1203, 2016	1150	2016
Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors J Wang, J Zhuang, S Iyer, XY Lin, TW Whitfield, MC Greven, BG Pierce, ... Genome research 22 (9), 1798-1812, 2012	1086	2012
Linking disease associations with regulatory information in the human genome MA Schaub, AP Boyle, A Kundaje, S Batzoglou, M Snyder Genome research 22 (9), 1748-1759, 2012	916	2012
Defining functional DNA elements in the human genome M Kellis, B Wold, MP Snyder, BE Bernstein, A Kundaje, GK Marinov, ... Proceedings of the National Academy of Sciences 111 (17), 6131-6138, 2014	905	2014
Opportunities and challenges for transcriptome-wide association studies M Wainberg, N Sinnott-Armstrong, N Mancuso, AN Barbeira, DA Knowles, ... Nature genetics 51 (4), 592-599, 2019	816	2019
Integrative analysis of 111 reference human epigenomes CR Epigenomics, A Kundaje, W Meuleman, J Ernst, M Bilenky, A Yen, ... Nature 518 (7539), 317-330, 2015	806	2015
Fine mapping of type 1 diabetes susceptibility loci and evidence for colocalization of causal variants with lymphoid gene enhancers S Onengut-Gumuscu, WM Chen, O Burren, NJ Cooper, AR Quinlan, ... Nature genetics 47 (4), 381-386, 2015	735	2015
Integrative annotation of chromatin elements from ENCODE data MM Hoffman, J Ernst, SP Wilder, A Kundaje, RS Harris, M Libbrecht, ... Nucleic acids research 41 (2), 827-841, 2013	633	2013

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