| The bio.tools registry of software tools and data resources for the life sciences J Ison, H Ienasescu, P Chmura, E Rydza, H Ménager, M Kalaš, ... Genome biology 20 (1), 1-4, 2019 | 70 | 2019 |
| High-quality and universal empirical atomic charges for chemoinformatics applications S Geidl, T Bouchal, T Raček, R Svobodová Vařeková, V Hejret, A Křenek, ... Journal of Cheminformatics 7 (1), 1-10, 2015 | 57 | 2015 |
| Atomic Charge Calculator II: web-based tool for the calculation of partial atomic charges T Raček, O Schindler, D Toušek, V Horský, K Berka, J Koča, R Svobodová Nucleic acids research 48 (W1), W591-W596, 2020 | 51 | 2020 |
| Community curation of bioinformatics software and data resources J Ison, H Ménager, B Brancotte, E Jaaniso, A Salumets, T Raček, ... Briefings in bioinformatics 21 (5), 1697-1705, 2020 | 22 | 2020 |
| NEEMP: software for validation, accurate calculation and fast parameterization of EEM charges T Raček, J Pazúriková, R Svobodová Vařeková, S Geidl, A Křenek, ... Journal of cheminformatics 8, 1-14, 2016 | 14 | 2016 |
| ChannelsDB 2.0: a comprehensive database of protein tunnels and pores in AlphaFold era A Špačková, O Vávra, T Raček, V Bazgier, D Sehnal, J Damborský, ... Nucleic Acids Research 52 (D1), D413-D418, 2024 | 10 | 2024 |
| Similarity search for an extreme application: Experience and implementation V Mic, T Raček, A Křenek, P Zezula International Conference on Similarity Search and Applications, 265-279, 2021 | 7 | 2021 |
| Optimized SQE atomic charges for peptides accessible via a web application O Schindler, T Raček, A Maršavelski, J Koča, K Berka, R Svobodová Journal of cheminformatics 13 (1), 45, 2021 | 6 | 2021 |
| αCharges: partial atomic charges for AlphaFold structures in high quality O Schindler, K Berka, A Cantara, A Křenek, D Tichý, T Raček, ... Nucleic Acids Research 51 (W1), W11-W16, 2023 | 2 | 2023 |
| ChannelsDB 2.0: Digging Protein Channels, Tunnels and Pores in the AlphaFold Era A Špačková, O Vávra, T Raček, V Bazgier, D Sehnal, J Damborský, ... | 1 | 2023 |
| „Empirical methods for calculation of partial atomic charges-applicability for proteins?" T Raček, O Schindler, RS Vaŕeková, J Koča ENBIK2018, 2018 | 1 | 2018 |
| GOLEM: A tool for visualizing the distribution of Gene regulatOry eLEMents within the plant promoters with a focus on male gametophyte L Nevosád, B Klodová, T Raček, T Přerovská, A Kusová, R Svobodová, ... bioRxiv, 2024.08. 05.606583, 2024 | | 2024 |
| Analysis and Visualization of Protein Channels, Tunnels, and Pores with MOLEonline and ChannelsDB 2.0 A Špačková, V Bazgier, T Raček, D Sehnal, R Svobodová, K Berka Protein Bioinformatics, 219-233, 2024 | | 2024 |
| GOLEM: distribution of Gene regulatOry eLEMents within the plant promoters L Nevosád, B Klodová, D Honys, R Svobodová, T Raček, ... arXiv preprint arXiv:2310.15206, 2023 | | 2023 |
| An evaluation of EDAM coverage in the Tools Ecosystem and prototype integration of Galaxy and WorkflowHub systems L Lamothe, JRB Jensen, H Ienasescu, OJR Gustafsson, A Gaignard, ... ELIXIR, 2023 | | 2023 |
| QM-like partial atomic charges for AlphaFold available online O Schindler, T Raček, K Jelínek, R Svobodová | | 2022 |
| SQE charge calculation and its applicability for proteins O Schindler, T Raček, R Svobodová, K Berka, J Koča | | 2020 |
| Partial atomic charges for proteins O Schindler, T Raček, R Svobodová, J Koča | | 2019 |
| AtomicChargeCalculator II T Raček, O Schindler, V Horský, J Koča, D Toušek, R Svobodová | | 2019 |
| bio.tools Sum – tool for exploration of summary information about bioinformatics services in bio. tools T Raček, RS Vařeková, D Polanský, K Berka, J Koča F1000Research 7, 2018 | | 2018 |
Radka SvobodováMasarykova UniverzitaPreverjeni e-poštni naslov na chemi.muni.cz