| An integrated encyclopedia of DNA elements in the human genome ENCODE Project Consortium Nature 489 (7414), 57, 2012 | 17574 | 2012 |
| RNA-Seq: a revolutionary tool for transcriptomics Z Wang, M Gerstein, M Snyder Nature reviews genetics 10 (1), 57-63, 2009 | 16521 | 2009 |
| A map of human genome variation from population scale sequencing 1000 Genomes Project Consortium Nature 467 (7319), 1061, 2010 | 9055 | 2010 |
| An integrated map of genetic variation from 1,092 human genomes 1000 Genomes Project Consortium Nature 491 (7422), 56, 2012 | 8492 | 2012 |
| Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project Management Group Liefer Laura A. 51 Wetterstrand Kris A. 51 Good Peter J. 51 ... nature 447 (7146), 799-816, 2007 | 6122 | 2007 |
| Landscape of transcription in human cells S Djebali, CA Davis, A Merkel, A Dobin, T Lassmann, A Mortazavi, ... Nature 489 (7414), 101-108, 2012 | 5819 | 2012 |
| GENCODE: the reference human genome annotation for The ENCODE Project J Harrow, A Frankish, JM Gonzalez, E Tapanari, M Diekhans, ... Genome research 22 (9), 1760-1774, 2012 | 5445 | 2012 |
| Functional profiling of the Saccharomyces cerevisiae genome G Giaever, AM Chu, L Ni, C Connelly, L Riles, S Véronneau, S Dow, ... nature 418 (6896), 387-391, 2002 | 5215 | 2002 |
| Global landscape of protein complexes in the yeast Saccharomyces cerevisiae NJ Krogan, G Cagney, H Yu, G Zhong, X Guo, A Ignatchenko, J Li, S Pu, ... Nature 440 (7084), 637-643, 2006 | 3509 | 2006 |
| The transcriptional landscape of the yeast genome defined by RNA sequencing U Nagalakshmi, Z Wang, K Waern, C Shou, D Raha, M Gerstein, ... Science 320 (5881), 1344-1349, 2008 | 3209 | 2008 |
| Global analysis of protein activities using proteome chips H Zhu, M Bilgin, R Bangham, D Hall, A Casamayor, P Bertone, N Lan, ... science 293 (5537), 2101-2105, 2001 | 3039 | 2001 |
| GENCODE reference annotation for the human and mouse genomes A Frankish, M Diekhans, AM Ferreira, R Johnson, I Jungreis, J Loveland, ... Nucleic acids research 47 (D1), D766-D773, 2019 | 2994 | 2019 |
| The molecular taxonomy of primary prostate cancer A Abeshouse, J Ahn, R Akbani, A Ally, S Amin, CD Andry, M Annala, ... Cell 163 (4), 1011-1025, 2015 | 2830 | 2015 |
| An integrated map of structural variation in 2,504 human genomes PH Sudmant, T Rausch, EJ Gardner, RE Handsaker, A Abyzov, ... Nature 526 (7571), 75-81, 2015 | 2569 | 2015 |
| Pan-cancer analysis of whole genomes Nature 578 (7793), 82-93, 2020 | 2526* | 2020 |
| The ENCODE (ENCyclopedia of DNA elements) project EA Feingold, PJ Good, MS Guyer, S Kamholz, L Liefer, K Wetterstrand, ... Science 306 (5696), 636-640, 2004 | 2456 | 2004 |
| ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia SG Landt, GK Marinov, A Kundaje, P Kheradpour, F Pauli, S Batzoglou, ... Genome research 22 (9), 1813-1831, 2012 | 2347 | 2012 |
| Comparing protein abundance and mRNA expression levels on a genomic scale D Greenbaum, C Colangelo, K Williams, M Gerstein Genome biology 4, 1-8, 2003 | 2259 | 2003 |
| A map of the interactome network of the metazoan C. elegans S Li, CM Armstrong, N Bertin, H Ge, S Milstein, M Boxem, PO Vidalain, ... Science 303 (5657), 540-543, 2004 | 2200 | 2004 |
| Evaluation of 16S rRNA gene sequencing for species and strain-level microbiome analysis JS Johnson, DJ Spakowicz, BY Hong, LM Petersen, P Demkowicz, ... Nature communications 10 (1), 5029, 2019 | 1836 | 2019 |
