Simon R. Harris

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Stephen BentleyWellcome Sanger InstitutePreverjeni e-poštni naslov na sanger.ac.uk
Nick CroucherImperial CollegePreverjeni e-poštni naslov na imperial.ac.uk
Matthew HoldenUniversity of St AndrewsPreverjeni e-poštni naslov na st-andrews.ac.uk
Thomas ConnorProfessor, Cardiff University ; Head of Public Health Genomics, Public Health WalesPreverjeni e-poštni naslov na cardiff.ac.uk
Andrew J. PageDirector of Technical Innovation, Theiagen GenomicsPreverjeni e-poštni naslov na quadram.ac.uk
Alison E MatherQuadram Institute BiosciencePreverjeni e-poštni naslov na quadram.ac.uk
Thomas D. OttoUniversity of GlasgowPreverjeni e-poštni naslov na glasgow.ac.uk
Claire ChewapreechaMahidol-Oxford Tropical Medicine Research UnitPreverjeni e-poštni naslov na tropmedres.ac
William HanageHarvard T H Chan School of Public HealthPreverjeni e-poštni naslov na hsph.harvard.edu
unemo magnusPreverjeni e-poštni naslov na amb.edu.pl
Jacqueline A. KeanePathogen Genomics IT ConsultantPreverjeni e-poštni naslov na cambridgebioinformatics.com
Josie BryantUniversity of CambridgePreverjeni e-poštni naslov na sanger.ac.uk
Helena Seth-SmithUniversity of Zurich, Institute of Medical MicrobiologyPreverjeni e-poštni naslov na seth-smith.org.uk
Sebastien GagneuxSwiss Tropical and Public Health InstitutePreverjeni e-poštni naslov na swisstph.ch
Stephen BakerUniversity of CambridgePreverjeni e-poštni naslov na medschl.cam.ac.uk
Matthew EllingtonUK Health Security AgencyPreverjeni e-poštni naslov na phe.gov.uk
Edward J. P. CartwrightUniversity of CambridgePreverjeni e-poštni naslov na cam.ac.uk
Dr Estee TorokUniversity of CambridgePreverjeni e-poštni naslov na cam.ac.uk
Robert A KingsleyGroup Leader at the Quadram Institute Bioscience, UKPreverjeni e-poštni naslov na quadram.ac.uk
David AanensenProfessor at Big Data Institute, University of OxfordPreverjeni e-poštni naslov na bdi.ox.ac.uk

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Simon R. Harris

Senior Program Officer, Bill & Melinda Gates Foundation

Preverjeni e-poštni naslov na sanger.ac.uk

Metagenomics Genomics Phylogenetics Bioinformatics Bacterial genomics


Naslov Razvrsti po navedbah Razvrsti po letniku Razvrsti po naslovu	Navedeno Navedeno	Leto
A tale of three next generation sequencing platforms: comparison of Ion torrent, pacific biosciences and illumina MiSeq sequencers M Quail, ME Smith, P Coupland, TD Otto, SR Harris, TR Connor, A Bertoni, ... BMC genomics 13 (1), 341, 2012	2851	2012
Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins NJ Croucher, AJ Page, TR Connor, AJ Delaney, JA Keane, SD Bentley, ... Nucleic acids research 43 (3), e15-e15, 2015	2250	2015
Out-of-Africa migration and Neolithic coexpansion of Mycobacterium tuberculosis with modern humans I Comas, M Coscolla, T Luo, S Borrell, KE Holt, M Kato-Maeda, J Parkhill, ... Nature genetics 45 (10), 1176-1182, 2013	1331	2013
Evolution of MRSA during hospital transmission and intercontinental spread SR Harris, EJ Feil, MTG Holden, MA Quail, EK Nickerson, N Chantratita, ... Science 327 (5964), 469-474, 2010	1295	2010
Artemis: an integrated platform for visualization and analysis of high-throughput sequence-based experimental data T Carver, SR Harris, M Berriman, J Parkhill, JA McQuillan Bioinformatics 28 (4), 464-469, 2012	1269	2012
SNP-sites: rapid efficient extraction of SNPs from multi-FASTA alignments AJ Page, B Taylor, AJ Delaney, J Soares, T Seemann, JA Keane, ... Microbial Genomics 2 (4), 2016	1205	2016
Circlator: automated circularization of genome assemblies using long sequencing reads M Hunt, N De Silva, TD Otto, J Parkhill, JA Keane, SR Harris Genome biology 16 (1), 1-10, 2015	1033	2015
Rapid pneumococcal evolution in response to clinical interventions NJ Croucher, SR Harris, C Fraser, MA Quail, J Burton, M van der Linden, ... Science 331 (6016), 430-434, 2011	1017	2011
Emergence and global spread of epidemic healthcare-associated Clostridium difficile M He, F Miyajima, P Roberts, L Ellison, DJ Pickard, MJ Martin, TR Connor, ... Nature Genetics, 2012	850	2012
Evidence for several waves of global transmission in the seventh cholera pandemic A Mutreja, DW Kim, NR Thomson, TR Connor, JH Lee, S Kariuki, ... Nature 477 (7365), 462-465, 2011	837	2011
Rapid whole-genome sequencing for investigation of a neonatal MRSA outbreak CU Köser, MTG Holden, MJ Ellington, EJP Cartwright, NM Brown, ... New England Journal of Medicine 366 (24), 2267-2275, 2012	817	2012
Whole-genome sequencing to identify transmission of <i>Mycobacterium abscessus</i> between patients with cystic fibrosis: a retrospective cohort study JM Bryant, DM Grogono, D Greaves, J Foweraker, I Roddick, T Inns, ... The Lancet, 2013	790	2013
Whole-genome sequencing for analysis of an outbreak of meticillin-resistant Staphylococcus aureus: a descriptive study SR Harris, EJP Cartwright, ME Török, MTG Holden, NM Brown, ... The Lancet Infectious Diseases 13 (2), 130-136, 2013	688	2013
Pre-Columbian mycobacterial genomes reveal seals as a source of New World human tuberculosis KI Bos, KM Harkins, A Herbig, M Coscolla, N Weber, I Comas, SA Forrest, ... Nature 514 (7523), 494-497, 2014	671	2014
Epidemic of carbapenem-resistant Klebsiella pneumoniae in Europe is driven by nosocomial spread S David, S Reuter, SR Harris, C Glasner, T Feltwell, S Argimon, ... Nature microbiology 4 (11), 1919-1929, 2019	662	2019
ARIBA: rapid antimicrobial resistance genotyping directly from sequencing reads M Hunt, AE Mather, L Sánchez-Busó, AJ Page, J Parkhill, JA Keane, ... Microbial genomics 3 (10), 2017	644	2017
Evolution and transmission of drug-resistant tuberculosis in a Russian population N Casali, V Nikolayevskyy, Y Balabanova, SR Harris, O Ignatyeva, ... Nature genetics 46 (3), 279-286, 2014	612	2014
Emergence and spread of a human-transmissible multidrug-resistant nontuberculous mycobacterium JM Bryant, DM Grogono, D Rodriguez-Rincon, I Everall, KP Brown, ... Science 354 (6313), 751-757, 2016	594	2016
Phandango: an interactive viewer for bacterial population genomics J Hadfield, NJ Croucher, RJ Goater, K Abudahab, DM Aanensen, ... Bioinformatics, btx610, 2017	592	2017
A genomic portrait of the emergence, evolution and global spread of a methicillin resistant Staphylococcus aureus pandemic MTG Holden, LY Hsu, K Kurt, LA Weinert, AE Mather, SR Harris, ... Genome Research, 2013	532	2013

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