Benjamín J. Sánchez

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Soavtorji

Jens NielsenProfessor in Systems Biology, Chalmers University of Technology, SwedenPreverjeni e-poštni naslov na chalmers.se
Eduard J KerkhovenDocent, Chalmers University of TechnologyPreverjeni e-poštni naslov na chalmers.se
Iván DomenzainAIxBio R&DPreverjeni e-poštni naslov na chalmers.se
Nikolaus SonnenscheinGinkgo BioworksPreverjeni e-poštni naslov na ginkgobioworks.com
Mihail AntonELIXIR Europe, UK | Chalmers University of Technology, SwedenPreverjeni e-poštni naslov na chalmers.se
Simonas MarcišauskasComputational Biologist at AIxBIO / Dubb & Co ABPreverjeni e-poštni naslov na aixb.io
Petri-Jaan LahtveeProfessor, Tallinn University of TechnologyPreverjeni e-poštni naslov na taltech.ee
Feiran Li 李斐然Tsinghua University, Chalmers Univeristy of TechnologyPreverjeni e-poštni naslov na sz.tsinghua.edu.cn
Michael Krogh JensenSenior researcher, Technical University of Denmark; CEO & Co-founder at BiomiaPreverjeni e-poštni naslov na biosustain.dtu.dk
Hongzhong LuShanghai Jiao Tong UniversityPreverjeni e-poštni naslov na sjtu.edu.cn
Yu ChenShenzhen Institutes of Advanced Technology, Chinese Academy of SciencesPreverjeni e-poštni naslov na siat.ac.cn
Sergo KasvandikPreverjeni e-poštni naslov na ut.ee
Eduardo AbeliukStanford UniversityPreverjeni e-poštni naslov na alumni.stanford.edu
Michael FeroCEO, TeselaGen Biotechnology, Inc.Preverjeni e-poštni naslov na teselagen.com
Jay KeaslingProfessor of Chemical & Biomolecular Engineering and of Bioengineering, University of CaliforniaPreverjeni e-poštni naslov na lbl.gov
Hector Garcia MartinLawrence Berkeley National LaboratoryPreverjeni e-poštni naslov na lbl.gov
Tijana RadivojevicAltos LabsPreverjeni e-poštni naslov na altoslabs.com
Søren Dalsgård PetersenPostdoc, Bioengineering, The Technical University of DenmarkPreverjeni e-poštni naslov na biosustain.dtu.dk
Avlant NilssonKarolinska InstitutetPreverjeni e-poštni naslov na ki.se
Cheng ZhangScience for Life LaboratoryPreverjeni e-poštni naslov na scilifelab.se

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Benjamín J. Sánchez

Senior Research Scientist @ Novonesis

Preverjeni e-poštni naslov na novonesis.com - Domača stran

Systems Biology Mathematical Modeling Comparative Genomics Data Visualization


Naslov Razvrsti po navedbah Razvrsti po letniku Razvrsti po naslovu	Navedeno Navedeno	Leto
MEMOTE for standardized genome-scale metabolic model testing C Lieven, ME Beber, BG Olivier, FT Bergmann, M Ataman, P Babaei, ... Nature biotechnology 38 (3), 272-276, 2020	471*	2020
Improving the phenotype predictions of a yeast genome‐scale metabolic model by incorporating enzymatic constraints BJ Sánchez, C Zhang, A Nilsson, PJ Lahtvee, EJ Kerkhoven, J Nielsen Molecular systems biology 13 (8), 935, 2017	465	2017
RAVEN 2.0: A versatile toolbox for metabolic network reconstruction and a case study on Streptomyces coelicolor H Wang, S Marcišauskas, BJ Sánchez, I Domenzain, D Hermansson, ... PLoS computational biology 14 (10), e1006541, 2018	359	2018
A consensus S. cerevisiae metabolic model Yeast8 and its ecosystem for comprehensively probing cellular metabolism H Lu, F Li, BJ Sánchez, Z Zhu, G Li, I Domenzain, S Marcišauskas, ... Nature communications 10 (1), 3586, 2019	343	2019
Combining mechanistic and machine learning models for predictive engineering and optimization of tryptophan metabolism J Zhang, SD Petersen, T Radivojevic, A Ramirez, A Pérez-Manríquez, ... Nature communications 11 (1), 4880, 2020	248	2020
Absolute quantification of protein and mRNA abundances demonstrate variability in gene-specific translation efficiency in yeast PJ Lahtvee, BJ Sánchez, A Smialowska, S Kasvandik, IE Elsemman, ... Cell systems 4 (5), 495-504. e5, 2017	205	2017
Reconstruction of a catalogue of genome-scale metabolic models with enzymatic constraints using GECKO 2.0 I Domenzain, B Sánchez, M Anton, EJ Kerkhoven, A Millán-Oropeza, ... Nature communications 13 (1), 3766, 2022	115	2022
Genome scale models of yeast: towards standardized evaluation and consistent omic integration BJ Sánchez, J Nielsen Integrative Biology 7 (8), 846-858, 2015	83	2015
Genome-scale modeling drives 70-fold improvement of intracellular heme production in Saccharomyces cerevisiae OP Ishchuk, I Domenzain, BJ Sánchez, F Muñiz-Paredes, JL Martínez, ... Proceedings of the National Academy of Sciences 119 (30), e2108245119, 2022	71	2022
Proteome allocations change linearly with the specific growth rate of Saccharomyces cerevisiae under glucose limitation J Xia, BJ Sánchez, Y Chen, K Campbell, S Kasvandik, J Nielsen Nature Communications 13 (1), 2819, 2022	60	2022
SLIMEr: probing flexibility of lipid metabolism in yeast with an improved constraint-based modeling framework BJ Sánchez, F Li, EJ Kerkhoven, J Nielsen BMC systems biology 13, 1-9, 2019	55	2019
Model-assisted fine-tuning of central carbon metabolism in yeast through dCas9-based regulation R Ferreira, C Skrekas, A Hedin, BJ Sánchez, V Siewers, J Nielsen, ... ACS Synthetic Biology 8 (11), 2457-2463, 2019	55	2019
Construction of robust dynamic genome-scale metabolic model structures of Saccharomyces cerevisiae through iterative re-parameterization BJ Sánchez, JR Pérez-Correa, E Agosin Metabolic engineering 25, 159-173, 2014	44	2014
Genome-scale metabolic modeling of P. thermoglucosidasius NCIMB 11955 reveals metabolic bottlenecks in anaerobic metabolism V Mol, M Bennett, BJ Sánchez, BK Lisowska, MJ Herrgård, AT Nielsen, ... Metabolic Engineering 65, 123-134, 2021	20	2021
Benchmarking accuracy and precision of intensity‐based absolute quantification of protein abundances in Saccharomyces cerevisiae BJ Sánchez, PJ Lahtvee, K Campbell, S Kasvandik, R Yu, I Domenzain, ... Proteomics 21 (6), 2000093, 2021	20	2021
From genotype to phenotype: computational approaches for inferring microbial traits relevant to the food industry ST Karlsen, MH Rau, BJ Sánchez, K Jensen, AA Zeidan FEMS Microbiology Reviews 47 (4), fuad030, 2023	14	2023
DebaryOmics: an integrative –omics study to understand the halophilic behaviour of Debaryomyces hansenii C Navarrete, BJ Sánchez, S Savickas, JL Martínez Microbial Biotechnology 15 (4), 1133-1151, 2022	11	2022
HIPPO: An iterative reparametrization method for identification and calibration of dynamic bioreactor models of complex processes BJ Sánchez, DC Soto, H Jorquera, CA Gelmi, JR Pérez-Correa Industrial & Engineering Chemistry Research 53 (48), 18514-18525, 2014	11	2014
Yeast9: a consensus genome-scale metabolic model for S. cerevisiae curated by the community C Zhang, BJ Sánchez, F Li, CWQ Eiden, WT Scott, UW Liebal, LM Blank, ... Molecular Systems Biology 20 (10), 1134-1150, 2024	9*	2024
standard-GEM: standardization of open-source genome-scale metabolic models M Anton, E Almaas, R Benfeitas, S Benito-Vaquerizo, LM Blank, A Dräger, ... bioRxiv, 2023.03. 21.512712, 2023	9	2023

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