| Reconstructing genome-scale metabolic models with merlin O Dias, M Rocha, EC Ferreira, I Rocha Nucleic acids research 43 (8), 3899-3910, 2015 | 187 | 2015 |
| Staphylococci phages display vast genomic diversity and evolutionary relationships H Oliveira, M Sampaio, LDR Melo, O Dias, WH Pope, GF Hatfull, ... BMC genomics 20 (1), 357, 2019 | 78 | 2019 |
| Correlation between sludge settling ability and image analysis information using partial least squares DP Mesquita, O Dias, AMA Dias, AL Amaral, EC Ferreira Analytica chimica acta 642 (1-2), 94-101, 2009 | 70 | 2009 |
| Monitoring of activated sludge settling ability through image analysis: validation on full-scale wastewater treatment plants DP Mesquita, O Dias, AL Amaral, EC Ferreira Bioprocess and biosystems engineering 32 (3), 361-367, 2009 | 61 | 2009 |
| iOD907, the first genome‐scale metabolic model for the milk yeast Kluyveromyces lactis O Dias, R Pereira, AK Gombert, EC Ferreira, I Rocha Biotechnology Journal 9 (6), 776-790, 2014 | 55 | 2014 |
| Predicting promoters in phage genomes using PhagePromoter M Sampaio, M Rocha, H Oliveira, O Dias Bioinformatics 35 (24), 5301-5302, 2019 | 46 | 2019 |
| merlin, an improved framework for the reconstruction of high-quality genome-scale metabolic models J Capela, D Lagoa, R Rodrigues, E Cunha, F Cruz, A Barbosa, J Bastos, ... Nucleic Acids Research 50 (11), 6052-6066, 2022 | 32* | 2022 |
| A tailspike with exopolysaccharide depolymerase activity from a new Providencia stuartii phage makes multidrug-resistant bacteria susceptible to serum-mediated killing H Oliveira, G Pinto, B Mendes, O Dias, H Hendrix, E Akturk, JP Noben, ... Applied and Environmental Microbiology 86 (13), e00073-20, 2020 | 32 | 2020 |
| A comparison between bright field and phase-contrast image analysis techniques in activated sludge morphological characterization DP Mesquita, O Dias, AL Amaral, EC Ferreira Microscopy and microanalysis 16 (2), 166-174, 2010 | 32 | 2010 |
| Microalgae biomass as an alternative source of biocompounds: New insights and future perspectives of extraction methodologies V Sousa, RN Pereira, AA Vicente, O Dias, P Geada Food Research International 173, 113282, 2023 | 31 | 2023 |
| Genome-Scale Metabolic Model of the Human Pathogen Candida albicans: A Promising Platform for Drug Target Prediction R Viana, O Dias, D Lagoa, M Galocha, I Rocha, MC Teixeira Journal of Fungi 6 (3), 171, 2020 | 29 | 2020 |
| Insights into the genome architecture and evolution of Shiga toxin encoding bacteriophages of Escherichia coli G Pinto, M Sampaio, O Dias, C Almeida, J Azeredo, H Oliveira BMC genomics 22 (1), 366, 2021 | 26 | 2021 |
| Modelling aptamers with nucleic acid mimics (NAM): From sequence to three-dimensional docking R Oliveira, E Pinho, AL Sousa, Ó Dias, NF Azevedo, C Almeida Plos one 17 (3), e0264701, 2022 | 25 | 2022 |
| Merlin: Metabolic models reconstruction using genome-scale information O Dias, M Rocha, EC Ferreira, I Rocha IFAC Proceedings Volumes 43 (6), 120-125, 2010 | 25 | 2010 |
| Systems biology in fungi O Dias, I Rocha Molecular Biology of Food and Water Borne Mycotoxigenic and Mycotic Fungi, 69-92, 2015 | 24 | 2015 |
| Genome-wide semi-automated annotation of transporter systems O Dias, D Gomes, P Vilaça, J Cardoso, M Rocha, EC Ferreira, I Rocha IEEE/ACM transactions on computational biology and bioinformatics 14 (2 …, 2016 | 23 | 2016 |
| Genome-wide metabolic (re-) annotation of Kluyveromyces lactis O Dias, AK Gombert, EC Ferreira, I Rocha BMC genomics 13 (1), 517, 2012 | 22 | 2012 |
| A review of methods for the reconstruction and analysis of integrated genome-scale models of metabolism and regulation F Cruz, JP Faria, M Rocha, I Rocha, O Dias Biochemical Society Transactions 48 (5), 1889-1903, 2020 | 21 | 2020 |
| Reconstructing high-quality large-scale metabolic models with merlin O Dias, M Rocha, EC Ferreira, I Rocha Metabolic Network Reconstruction and Modeling: Methods and Protocols, 1-36, 2018 | 21 | 2018 |
| Genome-wide metabolic re-annotation of Ashbya gossypii: new insights into its metabolism through a comparative analysis with Saccharomyces cerevisiae and Kluyveromyces lactis D Gomes, TQ Aguiar, O Dias, EC Ferreira, L Domingues, I Rocha BMC genomics 15 (1), 810, 2014 | 21 | 2014 |
Eugénio Campos FerreiraProfessor of Biological Engineering, Universidade do MinhoPreverjeni e-poštni naslov na deb.uminho.pt