Simón Poblete

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Soavtorji

Kurt KremerProfessor, Max Planck Institute for Polymer ResearchPreverjeni e-poštni naslov na mpip-mainz.mpg.de
Giovanni BussiScuola Internazionale Superiore di Studi Avanzati, Trieste, ItalyPreverjeni e-poštni naslov na sissa.it
Luigi Delle SiteInstitute for Mathematics, Department of Mathematics and Computer Science, Freie Universität BerlinPreverjeni e-poštni naslov na fu-berlin.de
Gerhard GompperProfessor of Physics, Forschungszentrum Jülich & Universität zu KölnPreverjeni e-poštni naslov na fz-juelich.de
Richard André CunhaUniversity of ZurichPreverjeni e-poštni naslov na chem.uzh.ch
Nils G WalterUniversity of Michigan, Ann ArborPreverjeni e-poštni naslov na umich.edu
Pavel BanášCzech Advanced Technology and Research Institute CATRIN, Palacky University OlomoucPreverjeni e-poštni naslov na upol.cz
Matej PraprotnikLaboratory for Molecular Modeling, National Institute of Chemistry, Ljubljana, SloveniaPreverjeni e-poštni naslov na cmm.ki.si
Daryan KempeAssociate Group Leader/Postdoctoral Research Fellow, UNSW SydneyPreverjeni e-poštni naslov na unsw.edu.au
Roland G. WinklerInstitute for Advanced Simulation, Forschungszentrum JülichPreverjeni e-poštni naslov na fz-juelich.de
Christoph JunghansLos Alamos National LaboratoryPreverjeni e-poštni naslov na lanl.gov
Joerg FitterProfessor für Biophysik, RWTH AachenPreverjeni e-poštni naslov na physik.rwth-aachen.de
Horacio V GuzmanRamón y Cajal Fellow & Group Leader @ Biophysics and Materials Engineering, CSIC / UAMPreverjeni e-poštni naslov na icmab.es
Giovanni CiccottiDept of Physics, University of Rome "La Sapienza"Preverjeni e-poštni naslov na roma1.infn.it
Adam WysockiForschungszentrum JülichPreverjeni e-poštni naslov na fz-juelich.de
Adolfo Poma, Dr. Hab.Group leader - Multiscale Modelling of Complex Systems at IPPT-PANPreverjeni e-poštni naslov na ippt.pan.pl
Liang HongSchool of physics and astronomy & institute of natural sciences, shanghai jiao tong university,Preverjeni e-poštni naslov na sjtu.edu.cn
Ralf BiehlJCNS-1 & IBI8, Forschungszentrum JülichPreverjeni e-poštni naslov na fz-juelich.de
Dmitry A. FedosovGroup leader, Institute for Advanced Simulation, Forschungszentrum JuelichPreverjeni e-poštni naslov na fz-juelich.de
Ivo HofackerUniversity of ViennaPreverjeni e-poštni naslov na tbi.univie.ac.at

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Simón Poblete

Assistant Professor. Universidad San Sebastián, Fundación Ciencia y Vida

Preverjeni e-poštni naslov na cienciavida.org

Molecular Dynamics Biophysics Multiscale Modelling Soft Matter RNA Simulations


Naslov Razvrsti po navedbah Razvrsti po letniku Razvrsti po naslovu	Navedeno Navedeno	Leto
RNA structural dynamics as captured by molecular simulations: a comprehensive overview J Šponer, G Bussi, M Krepl, P Banáš, S Bottaro, RA Cunha, A Gil-Ley, ... Chemical Reviews 118 (8), 4177, 2018	306	2018
RNA structural dynamics as captured by molecular simulations: a comprehensive overview J Sponer, G Bussi, M Krepl, P Banáš, S Bottaro, RA Cunha, A Gil-Ley, ... Chemical reviews 118 (8), 4177-4338, 2018	305	2018
Adaptive resolution molecular dynamics simulation through coupling<? format?> to an internal particle reservoir S Fritsch, S Poblete, C Junghans, G Ciccotti, L Delle Site, K Kremer Physical review letters 108 (17), 170602, 2012	175	2012
Coupling different levels of resolution in molecular simulations S Poblete, M Praprotnik, K Kremer, L Delle Site The Journal of chemical physics 132 (11), 2010	137	2010
Hydrodynamics of discrete-particle models of spherical colloids: A multiparticle collision dynamics simulation study S Poblete, A Wysocki, G Gompper, RG Winkler Physical Review E 90 (3), 033314, 2014	70	2014
A nucleobase-centered coarse-grained representation for structure prediction of RNA motifs S Poblete, S Bottaro, G Bussi Nucleic acids research 46 (4), 1674-1683, 2018	48	2018
Statistical physics problems in adaptive resolution computer simulations of complex fluids M Praprotnik, S Poblete, K Kremer Journal of Statistical Physics 145, 946-966, 2011	43	2011
Inter-dye distance distributions studied by a combination of single-molecule FRET-filtered lifetime measurements and a weighted accessible volume (wAV) algorithm H Höfig, M Gabba, S Poblete, D Kempe, J Fitter Molecules 19 (12), 19269-19291, 2014	41	2014
Comment on “Adaptive Multiscale Molecular<? format?> Dynamics of Macromolecular Fluids” M Praprotnik, S Poblete, L Delle Site, K Kremer Physical review letters 107 (9), 099801, 2011	38	2011
Conformational state distributions and catalytically relevant dynamics of a hinge-bending enzyme studied by single-molecule FRET and a coarse-grained simulation M Gabba, S Poblete, T Rosenkranz, A Katranidis, D Kempe, T Züchner, ... Biophysical journal 107 (8), 1913-1923, 2014	32	2014
Structure and dynamics of a compact state of a multidomain protein, the mercuric ion reductase L Hong, MA Sharp, S Poblete, R Biehl, M Zamponi, N Szekely, ... Biophysical journal 107 (2), 393-400, 2014	28	2014
A reference implementation of the adaptive resolution scheme in ESPResSo C Junghans, S Poblete Computer Physics Communications 181 (8), 1449-1454, 2010	28	2010
Static and dynamic light scattering by red blood cells: A numerical study J Mauer, M Peltomäki, S Poblete, G Gompper, DA Fedosov PLoS One 12 (5), e0176799, 2017	24	2017
Structural 3d domain reconstruction of the rna genome from viruses with secondary structure models S Poblete, HV Guzman Viruses 13 (8), 1555, 2021	16	2021
RNA secondary structures regulate adsorption of fragments onto flat substrates S Poblete, A Bozic, M Kanduc, R Podgornik, HV Guzman ACS omega 6 (48), 32823-32831, 2021	13	2021
Single-molecule FRET measurements in additive-enriched aqueous solutions D Kempe, M Cerminara, S Poblete, A Schöne, M Gabba, J Fitter Analytical chemistry 89 (1), 694-702, 2017	13	2017
Effects and limitations of a nucleobase-driven backmapping procedure for nucleic acids using steered molecular dynamics S Poblete, S Bottaro, G Bussi Biochemical and biophysical research communications 498 (2), 352-358, 2018	11	2018
The G\= oMartini approach: Revisiting the concept of contact maps and the modelling of protein complexes LF Cofas-Vargas, RA Moreira, S Poblete, M Chwastyk, AB Poma arXiv preprint arXiv:2311.08174, 2023	6	2023
Sampling globally and locally correct RNA 3D structures using Ernwin, SPQR and experimental SAXS data BC Thiel, G Bussi, S Poblete, IL Hofacker Nucleic Acids Research 52 (16), e73-e73, 2024	5	2024
RNA-Puzzles Round V: blind predictions of 23 RNA structures F Bu, Y Adam, RW Adamiak, M Antczak, BRH de Aquino, NG Badepally, ... Nature methods, 1-13, 2024	3	2024

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