| ANDSystem: an Associative Network Discovery System for automated literature mining in the field of biology VA Ivanisenko, OV Saik, NV Ivanisenko, ES Tiys, TV Ivanisenko, ... BMC systems biology 9, 1-10, 2015 | 164 | 2015 |
| ANDVisio: a new tool for graphic visualization and analysis of literature mined associative gene networks in the ANDSystem PS Demenkov, TV Ivanisenko, NA Kolchanov, VA Ivanisenko In silico biology 11 (3-4), 149-161, 2012 | 87 | 2012 |
| A new version of the ANDSystem tool for automatic extraction of knowledge from scientific publications with expanded functionality for reconstruction of associative gene … VA Ivanisenko, PS Demenkov, TV Ivanisenko, EL Mishchenko, OV Saik BMC bioinformatics 20, 5-15, 2019 | 75 | 2019 |
| Novel candidate genes important for asthma and hypertension comorbidity revealed from associative gene networks OV Saik, PS Demenkov, TV Ivanisenko, EY Bragina, MB Freidin, ... BMC medical genomics 11, 61-76, 2018 | 71 | 2018 |
| Biodiversity of the microbial mat of the Garga hot spring AS Rozanov, AV Bryanskaya, TV Ivanisenko, TK Malup, SE Peltek BMC evolutionary biology 17, 37-49, 2017 | 61 | 2017 |
| Interactome of the hepatitis C virus: literature mining with ANDSystem OV Saik, TV Ivanisenko, PS Demenkov, VA Ivanisenko Virus research 218, 40-48, 2016 | 54 | 2016 |
| Molecular analysis of the benthos microbial community in Zavarzin thermal spring (Uzon Caldera, Kamchatka, Russia) AS Rozanov, AV Bryanskaya, TK Malup, IA Meshcheryakova, ... BMC genomics 15, 1-15, 2014 | 52 | 2014 |
| ANDDigest: a new web-based module of ANDSystem for the search of knowledge in the scientific literature TV Ivanisenko, OV Saik, PS Demenkov, NV Ivanisenko, AN Savostianov, ... BMC bioinformatics 21, 1-21, 2020 | 49 | 2020 |
| Prioritization of genes involved in endothelial cell apoptosis by their implication in lymphedema using an analysis of associative gene networks with ANDSystem OV Saik, VV Nimaev, DB Usmonov, PS Demenkov, TV Ivanisenko, ... BMC medical genomics 12, 117-131, 2019 | 45 | 2019 |
| Molecular association of pathogenetic contributors to pre-eclampsia (pre-eclampsia associome) AS Glotov, ES Tiys, ES Vashukova, VS Pakin, PS Demenkov, OV Saik, ... BMC systems biology 9, 1-12, 2015 | 43 | 2015 |
| Plasma metabolomics and gene regulatory networks analysis reveal the role of nonstructural SARS-CoV-2 viral proteins in metabolic dysregulation in COVID-19 patients VA Ivanisenko, EV Gaisler, NV Basov, AD Rogachev, SV Cheresiz, ... Scientific Reports 12 (1), 19977, 2022 | 32 | 2022 |
| Search for new candidate genes involved in the comorbidity of asthma and hypertension based on automatic analysis of scientific literature OV Saik, PS Demenkov, TV Ivanisenko, EY Bragina, MB Freidin, ... Journal of integrative bioinformatics 15 (4), 20180054, 2018 | 30 | 2018 |
| The substitutions G245C and G245D in the Zn2+-binding pocket of the p53 protein result in differences of conformational flexibility of the DNA-binding domain SS Pintus, NV Ivanisenko, PS Demenkov, TV Ivanisenko, ... Journal of Biomolecular Structure and Dynamics 31 (1), 78-86, 2013 | 28 | 2013 |
| The new version of the ANDDigest tool with improved AI-based short names recognition TV Ivanisenko, PS Demenkov, NA Kolchanov, VA Ivanisenko International Journal of Molecular Sciences 23 (23), 14934, 2022 | 27 | 2022 |
| Visualization and Analysis of a Cardio Vascular Diseaseand MUPP1-related Biological Network combining Text Mining and Data Warehouse Approaches B Sommer, ES Tiys, B Kormeier, K Hippe, SJ Janowski, TV Ivanisenko, ... Journal of Integrative Bioinformatics (JIB) 7 (1), 114-139, 2010 | 18 | 2010 |
| The SOLANUM TUBEROSUM knowledge base: the section on molecular-genetic regulation of metabolic pathways. TV Ivanisenko, OV Saik, PS Demenkov, VK Khlestkin, EK Khlestkina, ... | 14 | 2018 |
| Computer analysis of regulation of hepatocarcinoma marker genes hypermethylated by HCV proteins EA Antropova, TM Khlebodarova, PS Demenkov, AS Venzel, ... Vavilov Journal of Genetics and Breeding 26 (8), 733, 2022 | 12 | 2022 |
| Gene networks for use in metabolomic data analysis of blood plasma from patients with postoperative delirium VA Ivanisenko, NV Basov, AA Makarova, AS Venzel, AD Rogachev, ... Vavilov Journal of Genetics and Breeding 27 (7), 768, 2023 | 11 | 2023 |
| FunGeneNet: a web tool to estimate enrichment of functional interactions in experimental gene sets ES Tiys, TV Ivanisenko, PS Demenkov, VA Ivanisenko BMC genomics 19, 103-116, 2018 | 11 | 2018 |
| Prioritization of potato genes involved in the formation of agronomically valuable traits using the SOLANUM TUBEROSUM knowledge base PS Demenkov, OV Saik, TV Ivanisenko, NA Kolchanov, AV Kochetov, ... Vavilovskii Zhurnal Genetiki i Selektsii= Vavilov Journal of Genetics and …, 2019 | 10 | 2019 |