| Ligand binding and activation of the Ah receptor MS Denison, A Pandini, SR Nagy, EP Baldwin, L Bonati Chemico-biological interactions 141 (1-2), 3-24, 2002 | 610 | 2002 |
| Structural and functional characterization of the aryl hydrocarbon receptor ligand binding domain by homology modeling and mutational analysis A Pandini, MS Denison, Y Song, AA Soshilov, L Bonati Biochemistry 46 (3), 696-708, 2007 | 158 | 2007 |
| Detection of the TCDD binding-fingerprint within the Ah receptor ligand binding domain by structurally driven mutagenesis and functional analysis A Pandini, AA Soshilov, Y Song, J Zhao, L Bonati, MS Denison Biochemistry 48 (25), 5972-5983, 2009 | 150 | 2009 |
| Detection of allosteric signal transmission by information-theoretic analysis of protein dynamics A Pandini, A Fornili, F Fraternali, J Kleinjung Biophysical Journal 102 (3), 225a, 2012 | 123 | 2012 |
| Predicting the accuracy of protein–ligand docking on homology models A Bordogna, A Pandini, L Bonati Journal of computational chemistry 32 (1), 81-98, 2011 | 117 | 2011 |
| Structural alphabets derived from attractors in conformational space A Pandini, A Fornili, J Kleinjung BMC bioinformatics 11, 1-18, 2010 | 89 | 2010 |
| Comparative analysis of homology models of the ah receptor ligand binding domain: verification of structure–function predictions by site-directed mutagenesis of a nonfunctional … D Fraccalvieri, AA Soshilov, SI Karchner, DG Franks, A Pandini, L Bonati, ... Biochemistry 52 (4), 714-725, 2013 | 74 | 2013 |
| Conformational and functional analysis of molecular dynamics trajectories by Self-Organising Maps D Fraccalvieri, A Pandini, F Stella, L Bonati BMC bioinformatics 12, 1-19, 2011 | 61 | 2011 |
| GSATools: analysis of allosteric communication and functional local motions using a structural alphabet A Pandini, A Fornili, F Fraternali, J Kleinjung Bioinformatics 29 (16), 2053-2055, 2013 | 57 | 2013 |
| Conservation and specialization in PAS domain dynamics A Pandini, L Bonati Protein Engineering Design and Selection 18 (3), 127-137, 2005 | 53 | 2005 |
| Dynamic Profiling of β-Coronavirus 3CL Mpro Protease Ligand-Binding Sites E Cho, M Rosa, R Anjum, S Mehmood, M Soban, M Mujtaba, K Bux, ... Journal of Chemical Information and Modeling 61 (6), 3058-3073, 2021 | 48 | 2021 |
| Machine learning prediction of allosteric drug activity from molecular dynamics F Marchetti, E Moroni, A Pandini, G Colombo The journal of physical chemistry letters 12 (15), 3724-3732, 2021 | 47 | 2021 |
| Specialized dynamical properties of promiscuous residues revealed by simulated conformational ensembles A Fornili, A Pandini, HC Lu, F Fraternali Journal of chemical theory and computation 9 (11), 5127-5147, 2013 | 45 | 2013 |
| Structure-based enzyme engineering improves donor-substrate recognition of Arabidopsis thaliana glycosyltransferases A Akere, SH Chen, X Liu, Y Chen, SC Dantu, A Pandini, D Bhowmik, ... Biochemical Journal 477 (15), 2791-2805, 2020 | 37 | 2020 |
| BCR‐ABL residues interacting with ponatinib are critical to preserve the tumorigenic potential of the oncoprotein P Buffa, C Romano, A Pandini, M Massimino, E Tirrò, F Di Raimondo, ... The FASEB Journal 28 (3), 1221-1236, 2014 | 37 | 2014 |
| Binding of myomesin to obscurin-like-1 at the muscle M-band provides a strategy for isoform-specific mechanical protection S Pernigo, A Fukuzawa, AEM Beedle, M Holt, A Round, A Pandini, ... Structure 25 (1), 107-120, 2017 | 35 | 2017 |
| The crystal structure of the human titin: obscurin complex reveals a conserved yet specific muscle M-band zipper module S Pernigo, A Fukuzawa, A Pandini, M Holt, J Kleinjung, M Gautel, ... Journal of molecular biology 427 (4), 718-736, 2015 | 31 | 2015 |
| The gearbox of the bacterial flagellar motor switch A Pandini, F Morcos, S Khan Structure 24 (7), 1209-1220, 2016 | 30 | 2016 |
| Ligand-induced perturbation of the HIF-2α: ARNT dimer dynamics S Motta, C Minici, D Corrada, L Bonati, A Pandini PLoS computational biology 14 (2), e1006021, 2018 | 28 | 2018 |
| PathDetect-SOM: A neural network approach for the identification of pathways in ligand binding simulations S Motta, L Callea, L Bonati, A Pandini Journal of Chemical Theory and Computation 18 (3), 1957-1968, 2022 | 26 | 2022 |
