| Systematic longitudinal survey of invasive Escherichia coli in England demonstrates a stable population structure only transiently disturbed by the emergence of ST131 T Kallonen, HJ Brodrick, SR Harris, J Corander, NM Brown, V Martin, ... Genome research 27 (8), 1437-1449, 2017 | 275 | 2017 |
| Whole genome sequencing of ESBL-producing Escherichia coli isolated from patients, farm waste and canals in Thailand C Runcharoen, KE Raven, S Reuter, T Kallonen, S Paksanont, ... Genome medicine 9, 1-11, 2017 | 110 | 2017 |
| Diversification of colonization factors in a multidrug-resistant Escherichia coli lineage evolving under negative frequency-dependent selection A McNally, T Kallonen, C Connor, K Abudahab, DM Aanensen, C Horner, ... MBio 10 (2), 10.1128/mbio. 00644-19, 2019 | 108 | 2019 |
| Bordetella pertussis strain variation and evolution postvaccination T Kallonen, Q He Expert review of vaccines 8 (7), 863-875, 2009 | 104 | 2009 |
| A large-scale genomic snapshot of Klebsiella spp. isolates in Northern Italy reveals limited transmission between clinical and non-clinical settings HA Thorpe, R Booton, T Kallonen, MJ Gibbon, N Couto, V Passet, ... Nature microbiology 7 (12), 2054-2067, 2022 | 86 | 2022 |
| Comparative genomics of Bordetella pertussis reveals progressive gene loss in Finnish strains E Heikkinen, T Kallonen, L Saarinen, R Sara, AJ King, FR Mooi, JT Soini, ... PloS one 2 (9), e904, 2007 | 69 | 2007 |
| Dynamics of intestinal multidrug-resistant bacteria colonisation contracted by visitors to a high-endemic setting: a prospective, daily, real-time sampling study A Kantele, E Kuenzli, SJ Dunn, DAB Dance, PN Newton, V Davong, ... The Lancet Microbe 2 (4), e151-e158, 2021 | 68 | 2021 |
| Whole-genome sequencing reveals the effect of vaccination on the evolution of Bordetella pertussis Y Xu, B Liu, K Gröndahl-Yli-Hannuksila, Y Tan, L Feng, T Kallonen, ... Scientific reports 5 (1), 12888, 2015 | 67 | 2015 |
| Emergence of ceftazidime-avibactam-resistant Klebsiella pneumoniae during treatment, Finland, December 2018 K Räisänen, I Koivula, H Ilmavirta, S Puranen, T Kallonen, O Lyytikäinen, ... Eurosurveillance 24 (19), 1900256, 2019 | 65 | 2019 |
| Longitudinal genomic surveillance of multidrug-resistant Escherichia coli carriage in a long-term care facility in the United Kingdom HJ Brodrick, KE Raven, T Kallonen, D Jamrozy, B Blane, NM Brown, ... Genome medicine 9, 1-11, 2017 | 60 | 2017 |
| Genomic landscape of extended-spectrum β-lactamase resistance in Escherichia coli from an urban African setting P Musicha, NA Feasey, AK Cain, T Kallonen, C Chaguza, C Peno, ... Journal of Antimicrobial Chemotherapy 72 (6), 1602-1609, 2017 | 60 | 2017 |
| Differences in the genomic content of Bordetella pertussis isolates before and after introduction of pertussis vaccines in four European countries T Kallonen, K Gröndahl-Yli-Hannuksela, A Elomaa, A Lutyńska, NK Fry, ... Infection, Genetics and Evolution 11 (8), 2034-2042, 2011 | 59 | 2011 |
| SNP-based typing: a useful tool to study Bordetella pertussis populations M van Gent, MJ Bart, HGJ van der Heide, KJ Heuvelman, T Kallonen, ... PLoS One 6 (5), e20340, 2011 | 57 | 2011 |
| Description of Klebsiella spallanzanii sp. nov. and of Klebsiella pasteurii sp. nov. C Merla, C Rodrigues, V Passet, M Corbella, HA Thorpe, TVS Kallonen, ... Frontiers in Microbiology 10, 2360, 2019 | 53 | 2019 |
| Differences in avidity of IgG antibodies to pertussis toxin after acellular pertussis booster vaccination and natural infection AM Barkoff, K Gröndahl-Yli-Hannuksela, J Vuononvirta, J Mertsola, ... Vaccine 30 (48), 6897-6902, 2012 | 51 | 2012 |
| Genomic analysis of Klebsiella pneumoniae isolates from Malawi reveals acquisition of multiple ESBL determinants across diverse lineages P Musicha, CL Msefula, AE Mather, C Chaguza, AK Cain, C Peno, ... Journal of Antimicrobial Chemotherapy 74 (5), 1223-1232, 2019 | 49 | 2019 |
| Effect of vaccination on Bordetella pertussis strains, China L Zhang, Y Xu, J Zhao, T Kallonen, S Cui, Y Xu, Q Hou, F Li, J Wang, ... Emerging infectious diseases 16 (11), 1695, 2010 | 45 | 2010 |
| Enrichment of nucleofected primary human CD4+ T cells: a novel and efficient method for studying gene function and role in human primary T helper cell differentiation J Tahvanainen, M Pykäläinen, T Kallonen, H Lähteenmäki, O Rasool, ... Journal of immunological methods 310 (1-2), 30-39, 2006 | 41 | 2006 |
| Proviral integration site for Moloney murine leukemia virus (PIM) kinases promote human T helper 1 cell differentiation J Tahvanainen, MK Kyläniemi, K Kanduri, B Gupta, H Lähteenmäki, ... Journal of Biological Chemistry 288 (5), 3048-3058, 2013 | 40 | 2013 |
| Rapid detection of the recently emerged Bordetella pertussis strains with the ptxP3 pertussis toxin promoter allele by real‐time PCR T Kallonen, J Mertsola, FR Mooi, Q He Clinical Microbiology and Infection 18 (10), E377-E379, 2012 | 35 | 2012 |
