| Rapid epidemic expansion of the SARS-CoV-2 Omicron variant in southern Africa R Viana, S Moyo, DG Amoako, H Tegally, C Scheepers, CL Althaus, ... Nature 603 (7902), 679-686, 2022 | 1646 | 2022 |
| Genomic assessment of invasion dynamics of SARS-CoV-2 Omicron BA. 1 JLH Tsui, JT McCrone, B Lambert, S Bajaj, RPD Inward, P Bosetti, ... Science 381 (6655), 336-343, 2023 | 44 | 2023 |
| Dispersal patterns and influence of air travel during the global expansion of SARS-CoV-2 variants of concern H Tegally, E Wilkinson, JLH Tsui, M Moir, D Martin, AF Brito, M Giovanetti, ... Cell 186 (15), 3277-3290. e16, 2023 | 42 | 2023 |
| Genomic epidemiology of SARS-CoV-2 under an elimination strategy in Hong Kong H Gu, R Xie, DC Adam, JLH Tsui, DK Chu, LDJ Chang, SSY Cheuk, ... Nature Communications 13 (1), 736, 2022 | 34 | 2022 |
| Synchrony of bird migration with global dispersal of avian influenza reveals exposed bird orders Q Yang, B Wang, P Lemey, L Dong, T Mu, RA Wiebe, F Guo, NS Trovão, ... Nature communications 15 (1), 1126, 2024 | 11 | 2024 |
| SARS-CoV-2 under an elimination strategy in Hong Kong H Gu, R Xie, DC Adam, JLH Tsui, DK Chu, LDJ Chang, SSY Cheuk, ... medRxiv, 2021 | 10 | 2021 |
| Global expansion of SARS-CoV-2 variants of concern: dispersal patterns and influence of air travel H Tegally, E Wilkinson, D Martin, M Moir, A Brito, M Giovanetti, K Khan, ... medRxiv, 2022 | 8 | 2022 |
| COVID-19 pandemic interventions reshaped the global dispersal of seasonal influenza viruses Z Chen, JLH Tsui, B Gutierrez, S Busch Moreno, L du Plessis, X Deng, ... Science 386 (6722), eadq3003, 2024 | 7 | 2024 |
| Impacts of climate change-related human migration on infectious diseases JLH Tsui, RE Pena, M Moir, RPD Inward, E Wilkinson, JE San, ... Nature Climate Change 14 (8), 793-802, 2024 | 6 | 2024 |
| Robust expansion of phylogeny for fast-growing genome sequence data Y Ye, MH Shum, JL Tsui, G Yu, DK Smith, H Zhu, JT Wu, Y Guan, ... PLoS computational biology 20 (2), e1011871, 2024 | 4 | 2024 |
| COVID-19 testing and reporting behaviours in England across different sociodemographic groups: a population-based study using testing data and data from community prevalence … S Bajaj, S Chen, R Creswell, R Naidoo, JLH Tsui, O Kolade, G Nicholson, ... The Lancet Digital Health 6 (11), e778-e790, 2024 | 3 | 2024 |
| Toward optimal disease surveillance with graph-based active learning JLH Tsui, M Zhang, P Sambaturu, S Busch-Moreno, MA Suchard, ... Proceedings of the National Academy of Sciences 121 (52), e2412424121, 2024 | 2 | 2024 |
| Quantifying the value of viral genomics when inferring who infected whom in the 2014–16 Ebola virus outbreak in Guinea A Robert, J Tsui Lok Hei, CH Watson, PS Gsell, Y Hall, A Rambaut, ... Virus evolution 9 (1), vead007, 2023 | 2 | 2023 |
| Disruption of seasonal influenza circulation and evolution during the 2009 H1N1 and COVID-19 pandemics in Southeastern Asia Z Chen, JLH Tsui, J Cai, S Su, C Viboud, L du Plessis, P Lemey, ... Nature Communications 16 (1), 475, 2025 | 1 | 2025 |
| Dengue virus importation risks in Africa: a modelling study J Poongavanan, J Lourenço, JLH Tsui, V Colizza, Y Ramphal, C Baxter, ... The Lancet Planetary Health 8 (12), e1043-e1054, 2024 | 1 | 2024 |
| Synchrony of Bird Migration with Avian Influenza Global Spread; Implications for Vulnerable Bird Orders Q Yang, B Wang, P Lemey, L Dong, T Mu, RA Wiebe, F Guo, NS Trovão, ... bioRxiv, 2023.05. 22.541648, 2023 | 1 | 2023 |
| Artificial intelligence for modelling infectious disease epidemics MUG Kraemer, JLH Tsui, SY Chang, S Lytras, MP Khurana, S Vanderslott, ... Nature 638 (8051), 623-635, 2025 | | 2025 |
| From the 100 Day Mission to 100 lines of software development: how to improve early outbreak analytics CT Cuartero, AC Carnegie, ZM Cucunuba, A Cori, SM Hollis, ... The Lancet Digital Health 7 (2), e161-e166, 2025 | | 2025 |
| Routes of importation and spatial dynamics of SARS-CoV-2 variants during localized interventions in Chile B Gutierrez, JLH Tsui, G Pullano, M Mazzoli, K Gangavarapu, RPD Inward, ... PNAS nexus 3 (11), pgae483, 2024 | | 2024 |
| Assessing Dengue Virus Importation Risks in Africa: A Climate and Travel-Based Model J Poongavanan, J Lourenço, JLH Tsui, V Colizza, Y Ramphal, C Baxter, ... medRxiv, 2024 | | 2024 |
