| Assembly and seasonality of core phyllosphere microbiota on perennial biofuel crops KL Grady, JW Sorensen, N Stopnisek, J Guittar, A Shade Nature Communications 10, 4135, 2019 | 248* | 2019 |
| Thaumarchaeal ammonia oxidation in an acidic forest peat soil is not influenced by ammonium amendment N Stopnišek, C Gubry-Rangin, S Höfferle, GW Nicol, I Mandic-Mulec, ... Applied and environmental microbiology 76 (22), 7626-7634, 2010 | 243 | 2010 |
| Abundance-occupancy distributions to prioritize plant core microbiome membership A Shade, N Stopnisek Current opinion in microbiology 49, 50-58, 2019 | 203 | 2019 |
| Genus‐wide acid tolerance accounts for the biogeographical distribution of soil Burkholderia populations N Stopnisek, N Bodenhausen, B Frey, N Fierer, L Eberl, L Weisskopf Environmental microbiology 16 (6), 1503-1512, 2014 | 151 | 2014 |
| Molecular mechanisms underlying the close association between soil Burkholderia and fungi N Stopnisek, D Zühlke, A Carlier, A Barberán, N Fierer, D Becher, ... The ISME journal 10 (1), 253-264, 2016 | 143 | 2016 |
| The chemistry of stress: understanding the ‘cry for help’of plant roots MS Rizaludin, N Stopnisek, JM Raaijmakers, P Garbeva Metabolites 11 (6), 357, 2021 | 115 | 2021 |
| Persistent microbiome members in the common bean rhizosphere: an integrated analysis of space, time, and plant genotype N Stopnisek, A Shade The ISME journal 15 (9), 2708-2722, 2021 | 111 | 2021 |
| Oxalotrophy, a widespread trait of plant-associated Burkholderia species, is involved in successful root colonization of lupin and maize by Burkholderia phytofirmans T Kost, N Stopnisek, K Agnoli, L Eberl, L Weisskopf Frontiers in microbiology 4, 421, 2014 | 104 | 2014 |
| Disentangling the genetic basis of rhizosphere microbiome assembly in tomato BO Oyserman, SS Flores, T Griffioen, X Pan, E Van Der Wijk, L Pronk, ... Nature communications 13 (1), 3228, 2022 | 92 | 2022 |
| Ammonia‐oxidizing bacteria are the primary N2O producers in an ammonia‐oxidizing archaea dominated alkaline agricultural soil KA Meinhardt, N Stopnisek, MW Pannu, SE Strand, SC Fransen, ... Environmental microbiology 20 (6), 2195-2206, 2018 | 83 | 2018 |
| Manipulating wild and tamed phytobiomes: challenges and opportunities TH Bell, KL Hockett, RI Alcalá-Briseño, M Barbercheck, GA Beattie, ... Phytobiomes Journal 3 (1), 3-21, 2019 | 49 | 2019 |
| Endophytic microbiome variation among single plant seeds AF Bintarti, A Sulesky-Grieb, N Stopnisek, A Shade Phytobiomes Journal 6 (1), 45-55, 2022 | 38* | 2022 |
| Seasonal activities of the phyllosphere microbiome of perennial crops A Howe, N Stopnisek, SK Dooley, F Yang, KL Grady, A Shade Nature Communications 14 (1), 1039, 2023 | 28 | 2023 |
| Synergistic epistasis enhances the co-operativity of mutualistic interspecies interactions S Turkarslan, N Stopnisek, AW Thompson, CE Arens, JJ Valenzuela, ... The ISME Journal 15 (8), 2233-2247, 2021 | 12 | 2021 |
| Gut metabolite L-lactate supports Campylobacter jejuni population expansion during acute infection R Sinha, RM LeVeque, SM Callahan, S Chatterjee, N Stopnisek, M Kuipel, ... Proceedings of the National Academy of Sciences 121 (2), e2316540120, 2024 | 8 | 2024 |
| An automated multiplexed turbidometric and data collection system for measuring growth kinetics of anaerobes dependent on gaseous substrates KA Hunt, J Forbes, F Taub, N Elliott, J Hardwicke, R Petersen, ... Journal of Microbiological Methods 188, 106294, 2021 | 3 | 2021 |
| The tomato's tale: Exploring taxonomy, biogeography, domestication, and microbiome for enhanced resilience SS Flores, V Cordovez, B Oyserman, N Stopnisek, JM Raaijmakers, ... Phytobiomes Journal 8 (1), 5-20, 2023 | 1 | 2023 |
| Ecology of the Genus Burkholderia in the Soil N Stopnisek University of Zurich, 2014 | 1 | 2014 |
| Insights into diversity, host-range, and temporal stability of Bacteroides and Phocaeicola prophages N Stopnisek, S Hedžet, T Accetto, M Rupnik BMC microbiology 25 (1), 92, 2025 | | 2025 |
| Exploring the resistome of probiotics, starter cultures, and cheeses via metagenomic analysis V Rozman, N Stopnišek, PM Lorbeg, T Obermajer, D Kušar, BB Matijašić Food Control, 111173, 2025 | | 2025 |
