| OMA orthology in 2021: website overhaul, conserved isoforms, ancestral gene order and more AM Altenhoff, CM Train, KJ Gilbert, I Mediratta, T Mendes de Farias, D Moi, ... Nucleic acids research 49 (D1), D373-D379, 2021 | 198 | 2021 |
| OrthoInspector 3.0: open portal for comparative genomics Y Nevers, A Kress, A Defosset, R Ripp, B Linard, JD Thompson, O Poch, ... Nucleic acids research 47 (D1), D411-D418, 2019 | 65 | 2019 |
| Insights into ciliary genes and evolution from multi-level phylogenetic profiling Y Nevers, MK Prasad, L Poidevin, K Chennen, A Allot, A Kress, R Ripp, ... Molecular biology and evolution 34 (8), 2016-2034, 2017 | 59 | 2017 |
| Quality assessment of gene repertoire annotations with OMArk Y Nevers, A Warwick Vesztrocy, V Rossier, CM Train, A Altenhoff, ... Nature biotechnology 43 (1), 124-133, 2025 | 53 | 2025 |
| The Quest for Orthologs orthology benchmark service in 2022 Y Nevers, TEM Jones, D Jyothi, B Yates, M Ferret, L Portell-Silva, L Codo, ... Nucleic Acids Research 50 (W1), W623-W632, 2022 | 49 | 2022 |
| The Quest for Orthologs benchmark service and consensus calls in 2020 AM Altenhoff, J Garrayo-Ventas, S Cosentino, D Emms, NM Glover, ... Nucleic acids research 48 (W1), W538-W545, 2020 | 47 | 2020 |
| Ten years of collaborative progress in the quest for orthologs B Linard, I Ebersberger, SE McGlynn, N Glover, T Mochizuki, M Patricio, ... Molecular biology and evolution 38 (8), 3033-3045, 2021 | 36 | 2021 |
| OMA orthology in 2024: improved prokaryote coverage, ancestral and extant GO enrichment, a revamped synteny viewer and more in the OMA Ecosystem AM Altenhoff, A Warwick Vesztrocy, C Bernard, CM Train, ... Nucleic acids research 52 (D1), D513-D521, 2024 | 34 | 2024 |
| Structural phylogenetics unravels the evolutionary diversification of communication systems in gram-positive bacteria and their viruses D Moi, C Bernard, M Steinegger, Y Nevers, M Langleib, C Dessimoz Biorxiv, 2023.09. 19.558401, 2023 | 32 | 2023 |
| Protein length distribution is remarkably uniform across the tree of life Y Nevers, NM Glover, C Dessimoz, O Lecompte Genome Biology 24 (1), 135, 2023 | 22* | 2023 |
| New genome assembly of the barn owl (Tyto alba alba) AL Ducrest, S Neuenschwander, E Schmid‐Siegert, M Pagni, C Train, ... Ecology and Evolution 10 (5), 2284-2298, 2020 | 15 | 2020 |
| Orthology: promises and challenges Y Nevers, A Defosset, O Lecompte Evolutionary biology—a transdisciplinary approach, 203-228, 2020 | 15 | 2020 |
| How to build phylogenetic species trees with OMA [version 2; peer review: 2 approved with reservations] D Dylus, Y Nevers, AM Altenhoff, A Gürtler, C Dessimoz, NM Glover F1000Research 9, 2022 | 13 | 2022 |
| A linear time solution to the labeled Robinson–Foulds distance problem S Briand, C Dessimoz, N El-Mabrouk, Y Nevers Systematic Biology 71 (6), 1391-1403, 2022 | 7 | 2022 |
| MyGeneFriends: a social network linking genes, genetic diseases, and researchers A Allot, K Chennen, Y Nevers, L Poidevin, A Kress, R Ripp, JD Thompson, ... Journal of medical Internet research 19 (6), e6676, 2017 | 7 | 2017 |
| Novel approach combining transcriptional and evolutionary signatures to identify new multiciliation genes A Defosset, D Merlat, L Poidevin, Y Nevers, A Kress, O Poch, O Lecompte Genes 12 (9), 1452, 2021 | 4 | 2021 |
| Proteome-scale detection of differential conservation patterns at protein and subprotein levels with BLUR A Defosset, A Kress, Y Nevers, R Ripp, JD Thompson, O Poch, ... Genome biology and evolution 13 (1), evaa248, 2021 | 4 | 2021 |
| From pairwise to multiple spliced alignment S Jammali, A Djossou, WYDD Ouédraogo, Y Nevers, I Chegrane, ... Bioinformatics advances 2 (1), vbab044, 2022 | 3 | 2022 |
| Orthology inference at scale with FastOMA S Majidian, Y Nevers, A Yazdizadeh Kharrazi, A Warwick Vesztrocy, ... Nature methods, 1-4, 2025 | 2 | 2025 |
| Matreex: compact and interactive visualisation of large gene families provides evidence for loss of intraflagellar transport in a myxozoan V Rossier, C Train, Y Nevers, M Robinson-Rechavi, C Dessimoz bioRxiv, 2023.02. 18.529053, 2023 | 2 | 2023 |