| Population genomics of the critically endangered kākāpō N Dussex, T Van Der Valk, HE Morales, CW Wheat, D Díez-del-Molino, ... Cell Genomics 1 (1), 2021 | 174 | 2021 |
| Exploring structural variation and gene family architecture with De Novo assemblies of 15 Medicago genomes P Zhou, KAT Silverstein, T Ramaraj, J Guhlin, R Denny, J Liu, AD Farmer, ... BMC genomics 18, 1-14, 2017 | 120 | 2017 |
| Select and resequence reveals relative fitness of bacteria in symbiotic and free-living environments LT Burghardt, B Epstein, J Guhlin, MS Nelson, MR Taylor, ND Young, ... Proceedings of the National Academy of Sciences 115 (10), 2425-2430, 2018 | 110 | 2018 |
| Detecting small plant peptides using SPADA (small peptide alignment discovery application) P Zhou, KAT Silverstein, L Gao, JD Walton, S Nallu, J Guhlin, ND Young BMC bioinformatics 14, 1-16, 2013 | 110 | 2013 |
| Validating genome-wide association candidates controlling quantitative variation in nodulation SJ Curtin, P Tiffin, J Guhlin, DI Trujillo, LT Burghardt, P Atkins, NJ Baltes, ... Plant Physiology 173 (2), 921-931, 2017 | 90 | 2017 |
| Transcriptomic basis of genome by genome variation in a legume‐rhizobia mutualism LT Burghardt, J Guhlin, CL Chun, J Liu, MJ Sadowsky, RM Stupar, ... Molecular ecology 26 (21), 6122-6135, 2017 | 56 | 2017 |
| The potential for a CRISPR gene drive to eradicate or suppress globally invasive social wasps PJ Lester, M Bulgarella, JW Baty, PK Dearden, J Guhlin, JM Kean Scientific reports 10 (1), 12398, 2020 | 44 | 2020 |
| Expanding the conservation genomics toolbox: incorporating structural variants to enhance genomic studies for species of conservation concern J Wold, KP Koepfli, SJ Galla, D Eccles, CJ Hogg, MF Le Lec, J Guhlin, ... Molecular Ecology 30 (23), 5949-5965, 2021 | 42 | 2021 |
| Galba: genome annotation with miniprot and AUGUSTUS T Brůna, H Li, J Guhlin, D Honsel, S Herbold, M Stanke, N Nenasheva, ... BMC bioinformatics 24 (1), 327, 2023 | 35 | 2023 |
| Genome-Wide Association Analyses in the Model Rhizobium Ensifer meliloti B Epstein, RAI Abou-Shanab, A Shamseldin, MR Taylor, J Guhlin, ... MSphere 3 (5), 10.1128/msphere. 00386-18, 2018 | 34 | 2018 |
| Genomics reveals widespread ecological speciation in flightless insects GA McCulloch, BJ Foster, L Dutoit, TWR Harrop, J Guhlin, PK Dearden, ... Systematic Biology 70 (5), 863-876, 2021 | 31 | 2021 |
| High-Quality Assemblies for Three Invasive Social Wasps from the Vespula Genus TWR Harrop, J Guhlin, GM McLaughlin, E Permina, P Stockwell, J Gilligan, ... G3: Genes, Genomes, Genetics 10 (10), 3479-3488, 2020 | 31 | 2020 |
| The complete replicons of 16 Ensifer meliloti strains offer insights into intra- and inter-replicon gene transfer, transposon-associated loci, and repeat elements M Nelson, J Guhlin, B Epstein, P Tiffin, MJ Sadowsky Microbial Genomics 4 (5), e000174, 2018 | 29 | 2018 |
| Species-wide genomics of kākāpō provides tools to accelerate recovery J Guhlin, MF Le Lec, J Wold, E Koot, D Winter, PJ Biggs, SJ Galla, ... Nature ecology & evolution 7 (10), 1693-1705, 2023 | 25* | 2023 |
| The Pacific Biosciences de novo assembled genome dataset from a parthenogenetic New Zealand wild population of the longhorned tick, Haemaphysalis longicornis Neumann, 1901 FD Guerrero, KG Bendele, N Ghaffari, J Guhlin, KR Gedye, KE Lawrence, ... Data in brief 27, 104602, 2019 | 17 | 2019 |
| ODG: Omics database generator-a tool for generating, querying, and analyzing multi-omics comparative databases to facilitate biological understanding J Guhlin, KAT Silverstein, P Zhou, P Tiffin, ND Young BMC bioinformatics 18, 1-8, 2017 | 17 | 2017 |
| An exploration of assembly strategies and quality metrics on the accuracy of the rewarewa (Knightia excelsa) genome AM McCartney, E Hilario, SS Choi, J Guhlin, JM Prebble, G Houliston, ... Molecular Ecology Resources 21 (6), 2125-2144, 2021 | 14* | 2021 |
| The promise and challenges of characterizing genome‐wide structural variants: A case study in a critically endangered parrot JR Wold, JG Guhlin, PK Dearden, AW Santure, TE Steeves Molecular ecology resources, 2023 | 10 | 2023 |
| Genomic signatures of parallel alpine adaptation in recently evolved flightless insects GA McCulloch, J Guhlin, L Dutoit, TWR Harrop, PK Dearden, JM Waters Molecular ecology 30 (24), 6677-6686, 2021 | 8 | 2021 |
| Germline progenitors and oocyte production in the honeybee queen ovary G Cullen, JB Gilligan, JG Guhlin, PK Dearden Genetics 225 (1), iyad138, 2023 | 7 | 2023 |
