Чланци са овлашћеним јавним приступом - António J M RibeiroСазнајте више
Није доступно нигде: 8
Enzymatic flexibility and reaction rate: a QM/MM study of HIV-1 protease
AJM Ribeiro, D Santos-Martins, N Russo, MJ Ramos, PA Fernandes
Acs Catalysis 5 (9), 5617-5626, 2015
Овлашћења: Fundação para a Ciência e a Tecnologia, Portugal
Unique triphenylphosphonium derivatives for enhanced mitochondrial uptake and photodynamic therapy
Z Hu, Y Sim, OL Kon, WH Ng, AJM Ribeiro, MJ Ramos, PA Fernandes, ...
Bioconjugate Chemistry 28 (2), 590-599, 2017
Овлашћења: Fundação para a Ciência e a Tecnologia, Portugal
Benchmarking of density functionals for the kinetics and thermodynamics of the hydrolysis of glycosidic bonds catalyzed by glycosidases
AT Pereira, AJM Ribeiro, PA Fernandes, MJ Ramos
International Journal of Quantum Chemistry 117 (18), e25409, 2017
Овлашћења: Fundação para a Ciência e a Tecnologia, Portugal
Improving the biodesulfurization of crude oil and derivatives: a qm/mm investigation of the catalytic mechanism of NADH-FMN oxidoreductase (DszD)
SF Sousa, JFM Sousa, ACC Barbosa, CE Ferreira, RPP Neves, ...
The Journal of Physical Chemistry A 120 (27), 5300-5306, 2016
Овлашћења: Fundação para a Ciência e a Tecnologia, Portugal
New insights in the catalytic mechanism of tyrosine ammonia-lyase given by QM/MM and QM cluster models
GP Pinto, AJM Ribeiro, MJ Ramos, PA Fernandes, M Toscano, N Russo
Archives of biochemistry and biophysics 582, 107-115, 2015
Овлашћења: Fundação para a Ciência e a Tecnologia, Portugal
HMG-CoA Reductase inhibitors: an updated review of patents of novel compounds and formulations (2011-2015)
EF Oliveira, D Santos-Martins, AM Ribeiro, NF Brás, NS Cerqueira, ...
Expert opinion on therapeutic patents 26 (11), 1257-1272, 2016
Овлашћења: Fundação para a Ciência e a Tecnologia, Portugal
Catalytic mechanism of retroviral integrase for the strand transfer reaction explored by QM/MM calculations
AR Araujo, AJM Ribeiro, PA Fernandes, MJ Ramos
Journal of chemical theory and computation 10 (12), 5458-5466, 2014
Овлашћења: Fundação para a Ciência e a Tecnologia, Portugal
Binding free energy calculations on E‐selectin complexes with sLex oligosaccharide analogs
PA Barra, AJM Ribeiro, MJ Ramos, VA Jiménez, JB Alderete, ...
Chemical Biology & Drug Design 89 (1), 114-123, 2017
Овлашћења: Fundação para a Ciência e a Tecnologia, Portugal
Доступно негде: 16
Mechanism and Catalytic Site Atlas (M-CSA): a database of enzyme reaction mechanisms and active sites
AJM Ribeiro, GL Holliday, N Furnham, JD Tyzack, K Ferris, JM Thornton
Nucleic acids research 46 (D1), D618-D623, 2018
Овлашћења: UK Medical Research Council
Application of quantum mechanics/molecular mechanics methods in the study of enzymatic reaction mechanisms
SF Sousa, AJM Ribeiro, RPP Neves, NF Brás, NM Cerqueira, ...
Wiley Interdisciplinary Reviews: Computational Molecular Science 7 (2), e1281, 2017
Овлашћења: US Department of Energy, Fundação para a Ciência e a Tecnologia, Portugal
Emerging concepts in pseudoenzyme classification, evolution, and signaling
AJM Ribeiro, S Das, N Dawson, R Zaru, S Orchard, JM Thornton, ...
Science Signaling 12 (594), eaat9797, 2019
Овлашћења: UK Biotechnology and Biological Sciences Research Council, Wellcome Trust …
PDBe-KB: a community-driven resource for structural and functional annotations
M Varadi, J Berrisford, M Deshpande, SS Nair, A Gutmanas, D Armstrong, ...
Nucleic Acids Research 48 (D1), D344-D353, 2020
Овлашћења: US National Institutes of Health, Research Foundation (Flanders), UK …
Conformational variation in enzyme catalysis: a structural study on catalytic residues
IG Riziotis, AJM Ribeiro, N Borkakoti, JM Thornton
Journal of Molecular Biology 434 (7), 167517, 2022
Овлашћења: European Molecular Biology Laboratory
Insight into enzymatic nitrile reduction: QM/MM study of the catalytic mechanism of QueF nitrile reductase
AJM Ribeiro, L Yang, MJ Ramos, PA Fernandes, ZX Liang, H Hirao
ACS Catalysis 5 (6), 3740-3751, 2015
Овлашћења: Fundação para a Ciência e a Tecnologia, Portugal
Ranking enzyme structures in the PDB by bound ligand similarity to biological substrates
JD Tyzack, L Fernando, AJM Ribeiro, N Borkakoti, JM Thornton
Structure 26 (4), 565-571. e3, 2018
Овлашћења: European Molecular Biology Laboratory
Identifying pseudoenzymes using functional annotation: pitfalls of common practice
AJM Ribeiro, JD Tyzack, N Borkakoti, JM Thornton
The FEBS Journal 287 (19), 4128-4140, 2020
Овлашћења: European Molecular Biology Laboratory
Transform-MinER: transforming molecules in enzyme reactions
JD Tyzack, AJM Ribeiro, N Borkakoti, JM Thornton
Bioinformatics 34 (20), 3597-3599, 2018
Овлашћења: European Molecular Biology Laboratory
cuRRBS: simple and robust evaluation of enzyme combinations for reduced representation approaches
DE Martin-Herranz, AJM Ribeiro, F Krueger, JM Thornton, W Reik, ...
Nucleic Acids Research 45 (20), 11559-11569, 2017
Овлашћења: UK Biotechnology and Biological Sciences Research Council, Wellcome Trust
Enzyme function and evolution through the lens of bioinformatics
AJM Ribeiro, IG Riziotis, N Borkakoti, JM Thornton
Biochemical Journal 480 (22), 1845-1863, 2023
Овлашћења: European Molecular Biology Laboratory
GRaSP-web: a machine learning strategy to predict binding sites based on residue neighborhood graphs
CA Santana, SC Izidoro, RC de Melo-Minardi, JD Tyzack, AJM Ribeiro, ...
Nucleic Acids Research 50 (W1), W392-W397, 2022
Овлашћења: US National Institutes of Health
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