qDSB-Seq is a general method for genome-wide quantification of DNA double-strand breaks using sequencing Y Zhu, A Biernacka, B Pardo, N Dojer, R Forey, M Skrzypczak, B Fongang, ... Nature communications 10 (1), 2313, 2019 | 52 | 2019 |
i-BLESS is an ultra-sensitive method for detection of DNA double-strand breaks A Biernacka, Y Zhu, M Skrzypczak, R Forey, B Pardo, M Grzelak, J Nde, ... Communications biology 1 (1), 181, 2018 | 49 | 2018 |
Regulation of local GTP availability controls RAC1 activity and cell invasion A Bianchi-Smiraglia, DW Wolff, DJ Marston, Z Deng, Z Han, S Moparthy, ... Nature communications 12 (1), 6091, 2021 | 36 | 2021 |
Ssb1 and Ssb2 cooperate to regulate mouse hematopoietic stem and progenitor cells by resolving replicative stress W Shi, T Vu, D Boucher, A Biernacka, J Nde, RK Pandita, J Straube, ... Blood, The Journal of the American Society of Hematology 129 (18), 2479-2492, 2017 | 23 | 2017 |
Coarse-Grained Modeling and Molecular Dynamics Simulations of Ca2+-Calmodulin J Nde, P Zhang, JC Ezerski, W Lu, K Knapp, PG Wolynes, MS Cheung Frontiers in Molecular Biosciences 8, 661322, 2021 | 9 | 2021 |
Evolutionary couplings and molecular dynamic simulations highlight details of GPCRs heterodimers’ interfaces KWT Nchourupouo, J Nde, YJW Ngouongo, SS Zekeng, B Fongang Molecules 28 (4), 1838, 2023 | 5 | 2023 |
Integrated analysis of patterns of DNA breaks reveals break formation mechanisms and their population distribution during replication stress Y Zhu, A Biernacka, B Pardo, R Forey, N Dojer, R Yousefi, J Nde, ... BioRxiv, 171439, 2017 | 4 | 2017 |
Quantitative DSB sequencing (qDSB-Seq): a method for genome-wide accurate estimation of absolute DNA double-strand break frequencies per cell Y Zhu, N Dojer, A Biernacka, B Pardo, R Forey, M Skrzypczak, B Fongang, ... bioRxiv, 171405, 2017 | 4 | 2017 |
Experiment and Simulation Reveal Residue Details for How Target Binding Tunes Calmodulin’s Calcium-Binding Properties J Nde, P Zhang, MN Waxham, MS Cheung The Journal of Physical Chemistry B 127 (13), 2900-2908, 2023 | 3 | 2023 |
Analyzing and interpreting DNA double-strand break sequencing data A Mitra, N Dojer, B Fongang, J Nde, Y Zhu, M Rowicka bioRxiv, 2020.03. 05.977801, 2020 | 2 | 2020 |
Maga Rowicka in AB Yingjie Zhu, B Pardo, R Forey, N Dojer, R Yousefi, J Berlin, N Kengne, ... bioRxiv, 2017 | 2 | 2017 |
CaXML: Chemistry‐informed machine learning explains mutual changes between protein conformations and calcium ions in calcium‐binding proteins using … P Zhang, J Nde, Y Eliaz, N Jennings, P Cieplak, MS Cheung Protein Science 34 (2), e70023, 2025 | | 2025 |
Chemistry-informed Machine Learning Explains Calcium-binding Proteins’ Fuzzy Shape for Communicating Changes in the Atomic States of Calcium Ions P Zhang, J Nde, Y Eliaz, N Jennings, P Cieplak, MS Cheung ArXiv, arXiv: 2407.17017 v1, 2024 | | 2024 |
Experiment and simulations reveal residue details for how target binding tunes calmodulin’s calcium binding properties JBN Kengne, P Zhang, N Waxham, MS Cheung Biophysical Journal 123 (3), 16a, 2024 | | 2024 |
Differential Remodeling of the BRCA1 Interactome by a Unique Minimal Clinical Truncation Mutation J Chen, ME Sardiu, MJ Rekowski, J Nde, ZS Clark, S Anant, ... bioRxiv, 2024.11. 26.625539, 2024 | | 2024 |
Coarse-Grained Molecular Dynamics Simulations of Ca2+-Calmodulin JBN Kengne, P Zhang, J Ezerski, PG Wolynes, MS Cheung Biophysical Journal 120 (3), 301a, 2021 | | 2021 |
Coarse-grained Molecular Dynamics Simulations of Ca2+-Calmodulin JB Nde Kengne, P Zhang, JC Ezerski, P Wolynes, M Cheung APS March Meeting Abstracts 2021, M71. 283, 2021 | | 2021 |
Structural Properties of Fe/Cu Magnetic Multilayers: A Monte Carlo Approach K Jules, Berlin, Nde, F Bernard, Z Serge SPIN 8 (3), 1850012, 2018 | | 2018 |
Structural properties of Fe/Cu magnetic multilayers: a Monte Carlo approach J Berlin Nde Kengne, B Fongang, S Zekeng arXiv e-prints, arXiv: 1711.08508, 2017 | | 2017 |
qDSB-Seq: quantitative DNA double-strand break sequencing Y Zhu, A Biernacka, B Pardo, N Dojer, R Forey, M Skrzypczak, B Fongang, ... | | 2017 |