| Anvi’o: an advanced analysis and visualization platform for ‘omics data AM Eren, ÖC Esen, C Quince, JH Vineis, HG Morrison, ML Sogin, ... PeerJ 3, e1319, 2015 | 1702* | 2015 |
| Community-led, integrated, reproducible multi-omics with anvi’o AM Eren, E Kiefl, A Shaiber, I Veseli, SE Miller, MS Schechter, I Fink, ... Nature microbiology 6 (1), 3-6, 2021 | 641 | 2021 |
| Nitrogen-fixing populations of Planctomycetes and Proteobacteria are abundant in surface ocean metagenomes TO Delmont, C Quince, A Shaiber, ÖC Esen, STM Lee, MS Rappé, ... Nature microbiology 3 (7), 804-813, 2018 | 534 | 2018 |
| Functional and genetic markers of niche partitioning among enigmatic members of the human oral microbiome A Shaiber, AD Willis, TO Delmont, S Roux, LX Chen, AC Schmid, ... Genome biology 21, 1-35, 2020 | 182 | 2020 |
| Community-led, integrated, reproducible multi-omics with anvi’o. Nat Microbiol 6: 3–6 AM Eren, E Kiefl, A Shaiber, I Veseli, SE Miller, MS Schechter, I Fink, ... | 121 | 2021 |
| Tracking microbial colonization in fecal microbiota transplantation experiments via genome-resolved metagenomics STM Lee, SA Kahn, TO Delmont, A Shaiber, ÖC Esen, NA Hubert, ... Microbiome 5, 1-10, 2017 | 92 | 2017 |
| Reconstructing rare soil microbial genomes using in situ enrichments and metagenomics TO Delmont, AM Eren, L Maccario, E Prestat, ÖC Esen, E Pelletier, ... Frontiers in microbiology 6, 358, 2015 | 91 | 2015 |
| The Wolbachia mobilome in Culex pipiens includes a putative plasmid J Reveillaud, SR Bordenstein, C Cruaud, A Shaiber, ÖC Esen, M Weill, ... Nature Communications 10 (1), 1051, 2019 | 51 | 2019 |
| Nitrogen-fixing populations of Planctomycetes and Proteobacteria are abundant in surface ocean metagenomes. Nat Microbiol 3: 804–813 TO Delmont, C Quince, A Shaiber, ÖC Esen, ST Lee, MS Rappé, ... | 50 | 2018 |
| FORENSIC: an online platform for fecal source identification A Roguet, ÖC Esen, AM Eren, RJ Newton, SL McLellan Msystems 5 (2), 10.1128/msystems. 00869-19, 2020 | 17 | 2020 |
| pyani v0. 2.8: average nucleotide identity (ANI) and related measures for whole genome comparisons L Pritchard, P Cock, Ö Esen | 15 | 2019 |
| Genome-resolved insights into a novel Spiroplasma symbiont of the Wheat Stem Sawfly (Cephus cinctus) CJ Yeoman, LM Brutscher, ÖC Esen, F Ibaoglu, C Fowler, AM Eren, ... PeerJ 7, e7548, 2019 | 14 | 2019 |
| Author Correction: Nitrogen-fixing populations of Planctomycetes and Proteobacteria are abundant in surface ocean metagenomes TO Delmont, C Quince, A Shaiber, ÖC Esen, STM Lee, MS Rappé, ... Nature Microbiology 3 (8), 963-963, 2018 | 11 | 2018 |
| The global biogeography of amino acid variants within a single SAR11 population is governed by natural selection TO Delmont, E Kiefl, O Kilinc, ÖC Esen, I Uysal, MS Rappé, S Giovannoni, ... bioRxiv, 170639, 2017 | 6 | 2017 |
| FORENSIC: an online platform for fecal source identification. mSystems 5: e00869-19 A Roguet, ÖC Esen, AM Eren, RJ Newton, SL McLellan | 2 | 2020 |
| Pyani: whole-genome classification using average nucleotide identity L Pritchard, B Harrington, P Cock, R Davey, N Waters, B Brankovics, ... | 2 | 2015 |
| FORENSIC: an Online Platform for Fecal Source Identification R Adélaïde, ÖC Esen, EA Murat, RJ Newton, SL McLellan MSystems, 2020 | | 2020 |
