Прати
Sabrina de Azevedo Silveira
Sabrina de Azevedo Silveira
Professor at Department of Computer Science, Universidade Federal de Viçosa
Верификована је имејл адреса на ufv.br
Наслов
Навело
Навело
Година
nAPOLI: a graph-based strategy to detect and visualize conserved protein-ligand interactions in large-scale
AV Fassio, LH Santos, SA Silveira, RS Ferreira, RC de Melo-Minardi
IEEE/ACM transactions on computational biology and bioinformatics 17 (4 …, 2019
452019
Propedia: a database for protein–peptide identification based on a hybrid clustering algorithm
PM Martins, LH Santos, D Mariano, FC Queiroz, LL Bastos, IS Gomes, ...
BMC bioinformatics 22, 1-20, 2021
442021
Protein structural bioinformatics: An overview
V de Almeida Paiva, I de Souza Gomes, CR Monteiro, MV Mendonça, ...
Computers in Biology and Medicine 147, 105695, 2022
412022
GRaSP: a graph-based residue neighborhood strategy to predict binding sites
CA Santana, SA Silveira, JPA Moraes, SC Izidoro, RC de Melo-Minardi, ...
Bioinformatics 36 (Supplement_2), i726-i734, 2020
272020
Protein abundance prediction through machine learning methods
M Ferreira, R Ventorim, E Almeida, S Silveira, W Silveira
Journal of molecular biology 433 (22), 167267, 2021
192021
Enzymap: Exploiting protein annotation for modeling and predicting ec number changes in uniprot/swiss-prot
SA Silveira, RC de Melo-Minardi, CH da Silveira, MM Santoro, W Meira Jr
PloS one 9 (2), e89162, 2014
122014
visGReMLIN: graph mining-based detection and visualization of conserved motifs at 3D protein-ligand interface at the atomic level
VS Ribeiro, CA Santana, AV Fassio, FR Cerqueira, CH da Silveira, ...
BMC bioinformatics 21, 1-12, 2020
112020
ADVISe: Visualizing the dynamics of enzyme annotations in UniProt/Swiss-Prot
SA Silveira, AO Rodrigues, RC de Melo-Minardi, CH da Silveira, W Meira
2012 IEEE Symposium on Biological Data Visualization (BioVis), 49-56, 2012
112012
Synthesis and virucide activity on zika virus of 1, 2, 3-triazole-containing vanillin derivatives
JV da Silva Rodrigues, PAR Gazolla, I da Cruz Pereira, RS Dias, ...
Antiviral research 212, 105578, 2023
102023
GRaSP-web: a machine learning strategy to predict binding sites based on residue neighborhood graphs
CA Santana, SC Izidoro, RC de Melo-Minardi, JD Tyzack, AJM Ribeiro, ...
Nucleic Acids Research 50 (W1), W392-W397, 2022
102022
Vermont: a multi-perspective visual interactive platform for mutational analysis
AV Fassio, PM Martins, SS Guimarães, SSA Junior, VS Ribeiro, ...
BMC bioinformatics 18, 51-63, 2017
82017
Vermont: Visualizing mutations and their effects on protein physicochemical and topological property conservation
SA Silveira, AV Fassio, VM Gonçalves-Almeida, EB de Lima, YT Barcelos, ...
BMC proceedings 8, 1-10, 2014
82014
Computational prediction of potential inhibitors for SARS-COV-2 main protease based on machine learning, docking, MM-PBSA calculations, and metadynamics
IS Gomes, CA Santana, LS Marcolino, LHF Lima, RC Melo-Minardi, ...
PLoS One 17 (4), e0267471, 2022
72022
ppiGReMLIN: a graph mining based detection of conserved structural arrangements in protein-protein interfaces
FC Queiroz, AMP Vargas, MGA Oliveira, GV Comarela, SA Silveira
BMC bioinformatics 21, 1-25, 2020
72020
Gremlin: A graph mining strategy to infer protein-ligand interaction patterns
CA Santana, FR Cerqueira, CH Da Silveira, AV Fassio, ...
2016 IEEE 16th International Conference on Bioinformatics and Bioengineering …, 2016
72016
RLPredictiOme, a machine learning-derived method for high-throughput prediction of plant receptor-like proteins, reveals novel classes of transmembrane receptors
JCF Silva, MA Ferreira, TFM Carvalho, FF Silva, S de A. Silveira, ...
International Journal of Molecular Sciences 23 (20), 12176, 2022
62022
GASS-Metal: identifying metal-binding sites on protein structures using genetic algorithms
VA Paiva, MV Mendonça, SA Silveira, DB Ascher, DEV Pires, SC Izidoro
Briefings in Bioinformatics 23 (5), bbac178, 2022
62022
How to compute protein residue contacts more accurately?
PM Martins, VD Mayrink, S de A. Silveira, CH da Silveira, LHF de Lima, ...
Proceedings of the 33rd Annual ACM Symposium on Applied Computing, 60-67, 2018
52018
CALI: A novel visual model for frequent pattern mining in protein-ligand graphs
SG Medina, AV Fassio, SA Silveira, CH da Silveira, RC de Melo-Minardi
2017 IEEE 17th International Conference on Bioinformatics and Bioengineering …, 2017
42017
Revealing protein-ligand interaction patterns through frequent subgraph mining
SA Silveira, AV Fassio, CH da Silveira, RC de Melo-Minardi
Proceedings of the International Conference on Bioinformatics …, 2015
42015
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Чланци 1–20