Metagenome-wide association analysis identifies microbial determinants of post-antibiotic ecological recovery in the gut KR Chng, TS Ghosh, YH Tan, T Nandi, IR Lee, AHQ Ng, C Li, ... Nature ecology & evolution 4 (9), 1256-1267, 2020 | 136 | 2020 |
Critical assessment of genome-scale metabolic networks: the need for a unified standard A Ravikrishnan, K Raman Briefings in bioinformatics 16 (6), 1057-1068, 2015 | 97 | 2015 |
Investigating metabolic interactions in a microbial co-culture through integrated modelling and experiments A Ravikrishnan, LM Blank, S Srivastava, K Raman Computational and Structural Biotechnology Journal 18, 1249-1258, 2020 | 49 | 2020 |
Genome-centric analysis of short and long read metagenomes reveals uncharacterized microbiome diversity in Southeast Asians JS Gounot, M Chia, D Bertrand, WY Saw, A Ravikrishnan, A Low, Y Ding, ... Nature Communications 13 (1), 6044, 2022 | 46 | 2022 |
Atopic dermatitis microbiomes stratify into ecologic dermotypes enabling microbial virulence and disease severity ASL Tay, C Li, T Nandi, KR Chng, AK Andiappan, VS Mettu, C de Cevins, ... Journal of Allergy and Clinical Immunology 147 (4), 1329-1340, 2021 | 46 | 2021 |
Enumerating all possible biosynthetic pathways in metabolic networks A Ravikrishnan, M Nasre, K Raman Scientific Reports 8 (1), 9932, 2018 | 44 | 2018 |
Long-term ecological and evolutionary dynamics in the gut microbiomes of carbapenemase-producing Enterobacteriaceae colonized subjects JTL Kang, JJY Teo, D Bertrand, A Ng, A Ravikrishnan, M Yong, OT Ng, ... Nature Microbiology 7 (10), 1516-1524, 2022 | 20 | 2022 |
Systems-level modelling of microbial communities: theory and practice A Ravikrishnan, K Raman CRC Press, 2018 | 19 | 2018 |
Profiling microbial communities in idiopathic granulomatous mastitis SS Ong, J Xu, CK Sim, AJ Khng, PJ Ho, PKW Kwan, A Ravikrishnan, ... International Journal of Molecular Sciences 24 (2), 1042, 2023 | 16 | 2023 |
Genome-scale model reconstruction of the methylotrophic yeast Ogataea polymorpha UW Liebal, BA Fabry, A Ravikrishnan, CVL Schedel, S Schmitz, LM Blank, ... BMC biotechnology 21, 1-8, 2021 | 15 | 2021 |
Mutual Exclusion of Methanobrevibacter Species in the Human Gut Microbiota Facilitates Directed Cultivation of a Candidatus Methanobrevibacter Intestini … A Low, JKY Lee, JS Gounot, A Ravikrishnan, Y Ding, WY Saw, LWL Tan, ... Microbiology Spectrum 10 (4), e00849-22, 2022 | 13 | 2022 |
Metagenome-wide association analysis identifies microbial determinants of post-antibiotic ecological recovery in the gut. Nat Ecol Evol 4: 1256–1267 KR Chng, TS Ghosh, YH Tan, T Nandi, IR Lee, AHQ Ng, C Li, ... | 11 | 2020 |
BugSigDB captures patterns of differential abundance across a broad range of host-associated microbial signatures L Geistlinger, C Mirzayi, F Zohra, R Azhar, S Elsafoury, C Grieve, ... Nature Biotechnology 42 (5), 790-802, 2024 | 9 | 2024 |
Hypervirulent Klebsiella pneumoniae employs genomic island encoded toxins against bacterial competitors in the gut YH Tan, P Arros, C Berríos-Pastén, I Wijaya, WHW Chu, Y Chen, ... The ISME Journal 18 (1), wrae054, 2024 | 6 | 2024 |
Genomecentric analysis of short and long read metagenomes reveals uncharac terized microbiome diversity in Southeast Asians. Nat Commun 13: 6044 JS Gounot, M Chia, D Bertrand, WY Saw, A Ravikrishnan, A Low, Y Ding, ... | 5 | 2022 |
Unraveling microbial interactions in the gut microbiome A Ravikrishnan, K Raman BioRxiv, 2021.05. 17.444446, 2021 | 3 | 2021 |
BugSigDB: accelerating microbiome research through systematic comparison to published microbial signatures L Geistlinger, C Mirzayi, F Zohra, R Azhar, S Elsafoury, C Grieve, ... medRxiv, 2022.10. 24.22281483, 2022 | 2 | 2022 |
Life stage impact on the human skin ecosystem: lipids and the microbial community MP Pagac, B Davient, LA Plado, HYI Lam, SM Lee, A Ravikrishnan, ... npj Biofilms and Microbiomes 11 (1), 13, 2025 | 1 | 2025 |
Skin metatranscriptomics reveals landscape of variation in microbial activity and gene expression across the human body M Chia, A Ng Hui Qi, A Ravikrishnan, AN Mohamed Naim, S Wearne, ... bioRxiv, 2024.12. 02.626500, 2024 | | 2024 |
Gut metagenomes of Asian octogenarians reveal metabolic potential expansion and distinct microbial species associated with aging phenotypes A Ravikrishnan, I Wijaya, E Png, KR Chng, EXP Ho, AHQ Ng, ... Nature Communications 15 (1), 7751, 2024 | | 2024 |