| NCBI prokaryotic genome annotation pipeline T Tatusova, M DiCuccio, A Badretdin, V Chetvernin, EP Nawrocki, ... Nucleic acids research 44 (14), 6614-6624, 2016 | 6055 | 2016 |
| An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea D McDonald, MN Price, J Goodrich, EP Nawrocki, TZ DeSantis, A Probst, ... The ISME journal 6 (3), 610-618, 2012 | 5470 | 2012 |
| Infernal 1.1: 100-fold faster RNA homology searches EP Nawrocki, SR Eddy Bioinformatics 29 (22), 2933-2935, 2013 | 2981 | 2013 |
| Infernal 1.0: inference of RNA alignments EP Nawrocki, DL Kolbe, SR Eddy Bioinformatics 25 (10), 1335-1337, 2009 | 1634 | 2009 |
| Rfam 12.0: updates to the RNA families database EP Nawrocki, SW Burge, A Bateman, J Daub, RY Eberhardt, SR Eddy, ... Nucleic acids research 43 (D1), D130-D137, 2015 | 1116 | 2015 |
| Rfam: updates to the RNA families database PP Gardner, J Daub, JG Tate, EP Nawrocki, DL Kolbe, S Lindgreen, ... Nucleic acids research 37 (suppl_1), D136-D140, 2009 | 1009 | 2009 |
| Rfam 13.0: shifting to a genome-centric resource for non-coding RNA families I Kalvari, J Argasinska, N Quinones-Olvera, EP Nawrocki, E Rivas, ... Nucleic acids research 46 (D1), D335-D342, 2018 | 965 | 2018 |
| Rfam 11.0: 10 years of RNA families SW Burge, J Daub, R Eberhardt, J Tate, L Barquist, EP Nawrocki, ... Nucleic acids research 41 (D1), D226-D232, 2013 | 933 | 2013 |
| Rfam 14: expanded coverage of metagenomic, viral and microRNA families I Kalvari, EP Nawrocki, N Ontiveros-Palacios, J Argasinska, K Lamkiewicz, ... Nucleic acids research 49 (D1), D192-D200, 2021 | 810 | 2021 |
| Rfam: Wikipedia, clans and the “decimal” release PP Gardner, J Daub, J Tate, BL Moore, IH Osuch, S Griffiths-Jones, ... Nucleic acids research 39 (suppl_1), D141-D145, 2010 | 476 | 2010 |
| Virus Variation Resource–improved response to emergent viral outbreaks EL Hatcher, SA Zhdanov, Y Bao, O Blinkova, EP Nawrocki, Y Ostapchuck, ... Nucleic acids research 45 (D1), D482-D490, 2017 | 466 | 2017 |
| Non‐coding RNA analysis using the Rfam database I Kalvari, EP Nawrocki, J Argasinska, N Quinones‐Olvera, RD Finn, ... Current protocols in bioinformatics 62 (1), e51, 2018 | 392 | 2018 |
| Query-dependent banding (QDB) for faster RNA similarity searches EP Nawrocki, SR Eddy PLoS computational biology 3 (3), e56, 2007 | 342 | 2007 |
| RNAcentral: a hub of information for non-coding RNA sequences Nucleic Acids Research 47 (D1), D221-D229, 2019 | 273 | 2019 |
| Structural RNA homology search and alignment using covariance models EP Nawrocki Washington University in St. Louis, 2009 | 268 | 2009 |
| RNAcentral 2021: secondary structure integration, improved sequence search and new member databases Nucleic acids research 49 (D1), D212-D220, 2021 | 257 | 2021 |
| Integrating membrane transport with male gametophyte development and function through transcriptomics KW Bock, D Honys, JM Ward, S Padmanaban, EP Nawrocki, KD Hirschi, ... Plant Physiology 140 (4), 1151-1168, 2006 | 207 | 2006 |
| Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research F Hufsky, K Lamkiewicz, A Almeida, A Aouacheria, C Arighi, A Bateman, ... Briefings in Bioinformatics 22 (2), 642-663, 2021 | 162 | 2021 |
| RNIE: genome-wide prediction of bacterial intrinsic terminators PP Gardner, L Barquist, A Bateman, EP Nawrocki, Z Weinberg Nucleic acids research 39 (14), 5845-5852, 2011 | 104 | 2011 |
| R2DT is a framework for predicting and visualising RNA secondary structure using templates BA Sweeney, D Hoksza, EP Nawrocki, CE Ribas, F Madeira, JJ Cannone, ... Nature Communications 12 (1), 3494, 2021 | 93 | 2021 |