| Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2 E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ... Nature biotechnology 37 (8), 852-857, 2019 | 18511 | 2019 |
| Qiita: rapid, web-enabled microbiome meta-analysis A Gonzalez, JA Navas-Molina, T Kosciolek, D McDonald, ... Nature methods 15 (10), 796-798, 2018 | 611 | 2018 |
| High-fiber, whole-food dietary intervention alters the human gut microbiome but not fecal short-chain fatty acids A Oliver, AB Chase, C Weihe, SB Orchanian, SF Riedel, CL Hendrickson, ... Msystems 6 (2), 10.1128/msystems. 00115-21, 2021 | 113 | 2021 |
| Toxoplasma gondii dissemination in the brain is facilitated by infiltrating peripheral immune cells CA Schneider, DX Figueroa Velez, SB Orchanian, LA Shallberg, D Agalliu, ... Mbio 13 (6), e02838-22, 2022 | 12 | 2022 |
| A transcriptional network required for bradyzoite development in Toxoplasma gondii is dispensable for recrudescent disease SL Sokol-Borrelli, SM Reilly, MJ Holmes, SB Orchanian, MD Massmann, ... Nature communications 14 (1), 6078, 2023 | 11 | 2023 |
| Monocytes as primary defenders against Toxoplasma gondii infection SB Orchanian, MB Lodoen Trends in Parasitology 39 (10), 837-849, 2023 | 8 | 2023 |
| Multiomic analyses of nascent preterm infant microbiomes differentiation suggest opportunities for targeted intervention SB Orchanian, JM Gauglitz, S Wandro, KC Weldon, M Doty, K Stillwell, ... Advanced biology 6 (8), 2101313, 2022 | 6 | 2022 |
| Deficiency in astrocyte CCL2 production reduces neuroimmune control of Toxoplasma gondii infection SB Orchanian, K Still, TH Harris, MB Lodoen PLoS pathogens 20 (1), e1011710, 2024 | 5 | 2024 |
| Genome sequences of cluster K mycobacteriophages Deby, LaterM, LilPharaoh, Paola, SgtBeansprout, and Sulley JM Gaballa, K Dabrian, R Desai, R Ngo, D Park, E Sakaji, Y Sun, B Tan, ... Microbiology Resource Announcements 8 (2), 10.1128/mra. 01481-18, 2019 | 4 | 2019 |
| The microbiome as a modulator of neurological health across the maternal-offspring interface SB Orchanian, EY Hsiao The Journal of Clinical Investigation 135 (4), 2025 | | 2025 |
| Innate immune responses to Toxoplasma gondii infection SB Orchanian UC Irvine, 2024 | | 2024 |
