| Target-specific precision of CRISPR-mediated genome editing AM Chakrabarti, T Henser-Brownhill, J Monserrat, AR Poetsch, ... Molecular cell 73 (4), 699-713. e6, 2019 | 267 | 2019 |
| Reduced microRNA-150 is associated with poor survival in pulmonary arterial hypertension CJ Rhodes, J Wharton, RA Boon, T Roexe, H Tsang, B Wojciak-Stothard, ... American journal of respiratory and critical care medicine 187 (3), 294-302, 2013 | 205 | 2013 |
| TDP-43 condensation properties specify its RNA-binding and regulatory repertoire M Hallegger, AM Chakrabarti, FCY Lee, BL Lee, AG Amalietti, HM Odeh, ... Cell 184 (18), 4680-4696. e22, 2021 | 177 | 2021 |
| Heteromeric RNP assembly at LINEs controls lineage-specific RNA processing J Attig, F Agostini, C Gooding, AM Chakrabarti, A Singh, N Haberman, ... Cell 174 (5), 1067-1081. e17, 2018 | 151 | 2018 |
| Data science issues in studying protein–RNA interactions with CLIP technologies AM Chakrabarti, N Haberman, A Praznik, NM Luscombe, J Ule Annual Review of Biomedical Data Science 1 (1), 235-261, 2018 | 68 | 2018 |
| A systems view of spliceosomal assembly and branchpoints with iCLIP M Briese, N Haberman, CR Sibley, R Faraway, AS Elser, AM Chakrabarti, ... Nature structural & molecular biology 26 (10), 930-940, 2019 | 36 | 2019 |
| Integrated transcriptome landscape of ALS identifies genome instability linked to TDP-43 pathology OJ Ziff, J Neeves, J Mitchell, G Tyzack, C Martinez-Ruiz, R Luisier, ... Nature Communications 14 (1), 2176, 2023 | 35 | 2023 |
| Using hiCLIP to identify RNA duplexes that interact with a specific RNA-binding protein Y Sugimoto, AM Chakrabarti, NM Luscombe, J Ule nature protocols 12 (3), 611-637, 2017 | 28 | 2017 |
| Reactive astrocytes in ALS display diminished intron retention OJ Ziff, DM Taha, H Crerar, BE Clarke, AM Chakrabarti, G Kelly, J Neeves, ... Nucleic acids research 49 (6), 3168-3184, 2021 | 26 | 2021 |
| An improved iCLIP protocol FCY Lee, AM Chakrabarti, H Hänel, E Monzón-Casanova, M Hallegger, ... BioRxiv, 2021.08. 27.457890, 2021 | 25 | 2021 |
| Nucleocytoplasmic mRNA redistribution accompanies RNA binding protein mislocalization in ALS motor neurons and is restored by VCP ATPase inhibition OJ Ziff, J Harley, Y Wang, J Neeves, G Tyzack, F Ibrahim, M Skehel, ... Neuron 111 (19), 3011-3027. e7, 2023 | 17 | 2023 |
| clipplotr—a comparative visualization and analysis tool for CLIP data AM Chakrabarti, C Capitanchik, J Ule, NM Luscombe RNA 29 (6), 715-723, 2023 | 12 | 2023 |
| RGS4 RNA Secondary Structure Mediates Staufen2 RNP Assembly in Neurons SM Fernández-Moya, J Ehses, KE Bauer, R Schieweck, AM Chakrabarti, ... International Journal of Molecular Sciences 22 (23), 13021, 2021 | 8 | 2021 |
| Data science issues in understanding protein-RNA interactions AM Chakrabarti, N Haberman, A Praznik, NM Luscombe, J Ule bioRxiv, 208124, 2017 | 8 | 2017 |
| A computationally-enhanced hiCLIP atlas reveals Staufen1-RNA binding features and links 3′ UTR structure to RNA metabolism AM Chakrabarti, IA Iosub, FCY Lee, J Ule, NM Luscombe Nucleic Acids Research 51 (8), 3573-3589, 2023 | 7 | 2023 |
| Meta-analysis of the amyotrophic lateral sclerosis spectrum uncovers genome instability OJ Ziff, J Neeves, J Mitchell, G Tyzack, NeuroLINCS consortium, ... medRxiv, 2022.08. 11.22278516, 2022 | 6 | 2022 |
| Progress in the understanding and management of pulmonary arterial hypertension AM Chakrabarti, JA Mitchell, SJ Wort Global Cardiology Science and Practice 2015 (1), 13, 2015 | 6 | 2015 |
| An evaluation of the use of a negative interferon-γ release assay for tuberculosis screening before TNF antagonist therapy G Woodfield, B Passey-Heaton, A Chakrabarti, A Pozniak, MR Loebinger European Respiratory Journal 44 (5), 1369-1372, 2014 | 5 | 2014 |
| nf-core/clipseq-a robust Nextflow pipeline for comprehensive CLIP data analysis C West, C Capitanchik, C Cheshire, NM Luscombe, A Chakrabarti, J Ule Wellcome Open Research 8, 286, 2023 | 4 | 2023 |
| m6a methylation orchestrates IMP1 regulation of microtubules during human neuronal differentiation P Klein, M Petrić Howe, J Harley, H Crook, S Esteban Serna, ... Nature Communications 15 (1), 4819, 2024 | 2 | 2024 |
