| A multimodal deep learning framework for predicting drug–drug interaction events Y Deng, X Xu, Y Qiu, J Xia, W Zhang, S Liu Bioinformatics 36 (15), 4316-4322, 2020 | 329 | 2020 |
| A Comprehensive Review of Computational Methods for Drug-drug Interaction Detection Y Qiu, Y Zhang, Y Deng, S Liu, W Zhang IEEE/ACM transactions on computational biology and bioinformatics, 2021 | 83 | 2021 |
| Enhancing Drug-Drug Interaction Prediction Using Deep Attention Neural Networks S Liu, Y Zhang, Y Cui, Y Qiu, Y Deng, Z Zhang, W Zhang IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2022 | 79 | 2022 |
| Tensor decomposition with relational constraints for predicting multiple types of microRNA-disease associations F Huang, X Yue, Z Xiong, Z Yu, S Liu, W Zhang Briefings in Bioinformatics, 2020 | 72 | 2020 |
| Predicting drug-drug interactions using multi-modal deep auto-encoders based network embedding and positive-unlabeled learning Y Zhang, Y Qiu, Y Cui, S Liu, W Zhang Methods 179, 37-46, 2020 | 68 | 2020 |
| META-DDIE: predicting drug–drug interaction events with few-shot learning Y Deng, Y Qiu, X Xu, S Liu, Z Zhang, S Zhu, W Zhang Briefings in Bioinformatics 23 (1), bbab514, 2022 | 52 | 2022 |
| Hierarchical Graph Representation Learning for the Prediction of Drug-Target Binding Affinity Z Chu, F Huang, H Fu, Y Quan, X Zhou, S Liu, W Zhang Information Sciences, 2022 | 48 | 2022 |
| CSGNN: Contrastive Self-Supervised Graph Neural Network for Molecular Interaction Prediction C Zhao, S Liu, F Huang, S Liu, W Zhang IJCAI 21, 3756-3763, 2021 | 47 | 2021 |
| Multi-way relation-enhanced hypergraph representation learning for anti-cancer drug synergy prediction X Liu, C Song, S Liu, M Li, X Zhou, W Zhang Bioinformatics, 2022 | 46 | 2022 |
| A label-propagation-probability-based algorithm for overlapping community detection SC Liu, FX Zhu, L Gan Chinese Journal of computers 39 (4), 717-729, 2016 | 36 | 2016 |
| Structural Network Embedding using Multi-modal Deep Auto-encoders for Predicting Drug-drug Interactions S Liu, Z Huang, Y Qiu, YPP Chen, W Zhang 2019 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2019 | 33 | 2019 |
| 基于标签传播概率的重叠社区发现算法 刘世超， 朱福喜， 甘琳 计算机学报 39 (4), 717-729, 2016 | 29 | 2016 |
| Multi-Relational Contrastive Learning Graph Neural Network for Drug-Drug Interaction Event Prediction Z Xiong, S Liu, F Huang, Z Wang, X Liu, Z Zhang, W Zhang Proceedings of the AAAI Conference on Artificial Intelligence 37 (4), 5339-5347, 2023 | 28 | 2023 |
| PredLnc-GFStack: A Global Sequence Feature Based on a Stacked Ensemble Learning Method for Predicting lncRNAs from Transcripts S Liu, X Zhao, G Zhang, W Li, F Liu, S Liu, W Zhang Genes 10 (9), 672, 2019 | 27 | 2019 |
| Predicting drug-disease associations via multi-task learning based on collective matrix factorization F Huang, Y Qiu, Q Li, S Liu, F Ni Frontiers in Bioengineering and Biotechnology, 218, 2020 | 24 | 2020 |
| Graph embedding ensemble methods based on the heterogeneous network for lncRNA-miRNA interaction prediction C Zhao, Y Qiu, S Zhou, S Liu, W Zhang, Y Niu BMC genomics 21 (13), 1-12, 2020 | 22 | 2020 |
| HimGNN: a novel hierarchical molecular graph representation learning framework for property prediction S Han, H Fu, Y Wu, G Zhao, Z Song, F Huang, Z Zhang, S Liu, W Zhang Briefings in Bioinformatics, bbad305, 2023 | 21 | 2023 |
| LncRNA-miRNA interaction prediction from the heterogeneous network through graph embedding ensemble learning S Zhou, X Yue, X Xu, S Liu, W Zhang, Y Niu 2019 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2019 | 20 | 2019 |
| A multimodal framework for improving in silico drug repositioning with the prior knowledge from knowledge graphs Z Xiong, F Huang, Z Wang, S Liu, W Zhang IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2021 | 18 | 2021 |
| EPIHC: Improving Enhancer-Promoter Interaction Prediction by using Hybrid features and Communicative learning S Liu, X Xu, Z Yang, X Zhao, S Liu, W Zhang IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2021 | 12 | 2021 |
Wen Zhang（章文）Professor, College of informatics, Huazhong Agricultural UniversityVerifierad e-postadress på mail.hzau.edu.cn
