Ali R. Zomorrodi

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Costas D. MaranasDonald B. Broughton Professor of Chemical Engineering, Penn State UniversityVerifierad e-postadress på psu.edu
Alessio FasanoProfessor of Pediatrics MGH Harvard Medical School - Professor of Nutrition Harvard T.H. Chan SchoolVerifierad e-postadress på mgh.harvard.edu
Daniel SegrèProfessor at Boston University, Biology, Biomedical Engineering, Physics, BioinformaticsVerifierad e-postadress på bu.edu
Maureen LeonardAssociate Professor of Pediatrics, Harvard Medical SchoolVerifierad e-postadress på mgh.harvard.edu
Jacopo TroisiTheoreo srl Spin-off Company of the University of SalernoVerifierad e-postadress på theoreosrl.com
Brian FanelliBioinformatics Manager, CosmosIDVerifierad e-postadress på cosmosid.com
Meritxell PujolassosPhD, Professor at University of Vic - Central University of CataloniaVerifierad e-postadress på uvic.cat
Anupam ChowdhuryPhD, Chemical Engineering, The Pennsylvania State UniversityVerifierad e-postadress på psu.edu
Angelo ColucciPhd student, Dipartimento di Medicina, Chirurgia e Odontoiatria "Scuola Medica Salernitana"Verifierad e-postadress på unisa.it
Ruggiero FrancavillaDipertimento Interdiscliplinare di MedicinaVerifierad e-postadress på uniba.it
Nur A HasanUniversity of Maryland; EzBiome Inc.Verifierad e-postadress på umd.edu
Hiren KarathiaBioinformatics Manager; NCATS, NIHVerifierad e-postadress på nih.gov
Salvatore CucchiaraProfessore, Sapienza Università di RomaVerifierad e-postadress på uniroma1.it
Sridhar RanganathanPrincipal Computational Biologist, 64xBioVerifierad e-postadress på 64xbio.com
James C. LiaoAcademia SinicaVerifierad e-postadress på gate.sinica.edu.tw
Mohammad Mazharul IslamResearch Associate, University of VirginiaVerifierad e-postadress på virginia.edu
Ali KhodayariPhD in Chemical Engineering | Penn StateVerifierad e-postadress på genomatica.com
Jacqueline ShanksManley R. Hoppe Professor of Chemical and Biological Engineering, Iowa State UniversityVerifierad e-postadress på iastate.edu
Chiara Maria TrovatoSapienza University of RomeVerifierad e-postadress på uniroma1.it
Jimmy G Lafontaine RiveraChemical Engineering, UCLAVerifierad e-postadress på ucla.edu

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Ali R. Zomorrodi

Assistant Professor of Pediatrics at Massachusetts General Hospital & Harvard Medical School

Verifierad e-postadress på mgh.harvard.edu - Startsida

Microbiome AI Metabolism Nutrition


Titel Sortera efter citat Sortera efter år Sortera efter titel	Citeras av Citeras av	År
OptCom: a multi-level optimization framework for the metabolic modeling and analysis of microbial communities AR Zomorrodi, CD Maranas PLoS computational biology 8 (2), e1002363, 2012	444	2012
Synthetic ecology of microbes: mathematical models and applications AR Zomorrodi, D Segrè Journal of molecular biology 428 (5), 837-861, 2016	236	2016
d-OptCom: dynamic multi-level and multi-objective metabolic modeling of microbial communities AR Zomorrodi, MM Islam, CD Maranas ACS synthetic biology 3 (4), 247-257, 2014	213	2014
Comparison of PID Controller Tuning Methods M Shahrokhi, A Zomorrodi https://yunus.hacettepe.edu.tr/~ounver/documents/OMU412/Lectures …, 2013	210*	2013
A kinetic model of Escherichia coli core metabolism satisfying multiple sets of mutant flux data A Khodayari, AR Zomorrodi, JC Liao, CD Maranas (*Joint 1st authors) Metabolic engineering 25, 50-62, 2014	208	2014
Genome‐scale gene/reaction essentiality and synthetic lethality analysis PF Suthers, A Zomorrodi, CD Maranas (*Joint 1st authors) Molecular systems biology 5 (1), 2009	201	2009
Mathematical optimization applications in metabolic networks AR Zomorrodi, PF Suthers, S Ranganathan, CD Maranas Metabolic engineering 14 (6), 672-686, 2012	183	2012
k-OptForce: integrating kinetics with flux balance analysis for strain design A Chowdhury, AR Zomorrodi, CD Maranas PLoS computational biology 10 (2), e1003487, 2014	165	2014
Genome-driven evolutionary game theory helps understand the rise of metabolic interdependencies in microbial communities AR Zomorrodi, D Segrè Nature communications 8 (1), 1563, 2017	143	2017
An integrated computational and experimental study for overproducing fatty acids in Escherichia coli S Ranganathan, TW Tee, A Chowdhury#, AR Zomorrodi#, JM Yoon, ... Metabolic engineering 14 (6), 687-704, 2012	138	2012
Microbiome signatures of progression toward celiac disease onset in at-risk children in a longitudinal prospective cohort study MM Leonarda, F Valitutti, H Karathia, M Pujolassos, V Kenyon, B Fanelli, ... Proceedings of the National Academy of Sciences 118 (29), e2020322118, 2021	134	2021
Improving the iMM904 S. cerevisiae metabolic model using essentiality and synthetic lethality data AR Zomorrodi, CD Maranas BMC systems biology 4 (1), 1, 2010	126	2010
Optimization methods in metabolic networks CD Maranas, AR Zomorrodi John Wiley & Sons, 2016	107	2016
Multi-omics analysis reveals the influence of genetic and environmental risk factors on developing gut microbiota in infants at risk of celiac disease MM Leonard, H Karathia, M Pujolassos, J Troisi, F Valitutti, ... Microbiome 130, https://doi.org/10.1186/s40168-020-00906, 2020	89	2020
Computational modeling of metabolism in microbial communities on a genome-scale AV Colarusso, I Goodchild-Michelman, M Rayle, AR Zomorrodi Current Opinion in Systems Biology 26, 46-57, 2021	64	2021
Bilevel optimization techniques in computational strain design A Chowdhury, AR Zomorrodi, CD Maranas Computers & Chemical Engineering 72, 363-372, 2015	50	2015
Down-regulation of HtrA1 activates the epithelial-mesenchymal transition and ATM DNA damage response pathways N Wang, KA Eckert, AR Zomorrodi, P Xin, W Pan, DA Shearer, J Weisz, ... PloS one 7 (6), e39446, 2012	49	2012
Gut microbiota in celiac disease: microbes, metabolites, pathways and therapeutics KL Olshan, MM Leonard, G Serena, AR Zomorrodi, A Fasano Expert review of clinical immunology 16 (11), 1075-1092, 2020	40	2020
Optimization‐driven identification of genetic perturbations accelerates the convergence of model parameters in ensemble modeling of metabolic networks AR Zomorrodi, JG Lafontaine Rivera, JC Liao, CD Maranas Biotechnology journal 8 (9), 1090-1104, 2013	34	2013
Microbiota and Metabolomic Patterns in the Breast Milk of Subjects with Celiac Disease on a Gluten-Free Diet KL Olshan, AR Zomorrodi, M Pujolassos, J Troisi, N Khan, ... Nutrients 13 (7), 2243, 2021	17	2021

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