Enhanced receptor binding of SARS-CoV-2 through networks of hydrogen-bonding and hydrophobic interactions Y Wang, M Liu, J Gao Proceedings of the National Academy of Sciences 117 (25), 13967-13974, 2020 | 322 | 2020 |
Explicit polarization: A quantum mechanical framework for developing next generation force fields J Gao, DG Truhlar, Y Wang, MJM Mazack, P Löffler, MR Provorse, ... Accounts of Chemical Research 47 (9), 2837-2845, 2014 | 102 | 2014 |
QM/MM through the 1990s: the first twenty years of method development and applications M Liu, Y Wang, Y Chen, MJ Field, J Gao Israel journal of chemistry 54 (8‐9), 1250-1263, 2014 | 60 | 2014 |
Cushing’s syndrome driver mutation disrupts protein kinase A allosteric network, altering both regulation and substrate specificity C Walker, Y Wang, C Olivieri, A Karamafrooz, J Casby, K Bathon, ... Science Advances 5 (8), eaaw9298, 2019 | 55 | 2019 |
Density functional theory study of the aluminium (III) hydrolysis in aqueous solution W Yang, Z Qian, Q Miao, Y Wang, S Bi Physical Chemistry Chemical Physics 11 (14), 2396-2401, 2009 | 48 | 2009 |
Globally correlated conformational entropy underlies positive and negative cooperativity in a kinase’s enzymatic cycle Y Wang, M VS, J Kim, G Li, LG Ahuja, P Aoto, SS Taylor, G Veglia Nature Communications 10 (1), 799, 2019 | 44 | 2019 |
Dynamical and allosteric regulation of photoprotection in light harvesting complex II H Li, Y Wang, M Ye, S Li, D Li, H Ren, M Wang, L Du, H Li, G Veglia, ... Science China Chemistry 63, 1121-1133, 2020 | 42 | 2020 |
Communication: Variational many-body expansion: Accounting for exchange repulsion, charge delocalization, and dispersion in the fragment-based explicit polarization method J Gao, Y Wang The Journal of Chemical Physics 136 (7), 2012 | 42 | 2012 |
Multilevel X-Pol: A fragment-based method with mixed quantum mechanical representations of different fragments Y Wang, CP Sosa, A Cembran, DG Truhlar, J Gao The Journal of Physical Chemistry B 116 (23), 6781-6788, 2012 | 41 | 2012 |
An alternatingly amphiphilic, resistance-resistant antimicrobial oligoguanidine with dual mechanisms of action Z Chen, C Zhou, Y Xu, K Wen, J Song, S Bai, C Wu, W Huang, Q Cai, ... Biomaterials 275, 120858, 2021 | 39 | 2021 |
Polarized Molecular Orbital Model Chemistry 3. The PMO Method Extended to Organic Chemistry M Isegawa, L Fiedler, HR Leverentz, Y Wang, S Nachimuthu, J Gao, ... Journal of chemical theory and computation 9 (1), 33-45, 2013 | 34 | 2013 |
Conformational Landscape of the PRKACA-DNAJB1 Chimeric Kinase, the Driver for Fibrolamellar Hepatocellular Carcinoma MD Tomasini, Y Wang, A Karamafrooz, G Li, T Beuming, J Gao, SS Taylor, ... Scientific reports 8 (1), 720, 2018 | 33 | 2018 |
On the interfragment exchange in the X-Pol method A Cembran, P Bao, Y Wang, L Song, DG Truhlar, J Gao Journal of chemical theory and computation 6 (8), 2469-2476, 2010 | 33 | 2010 |
Multi-state recognition pathway of the intrinsically disordered protein kinase inhibitor by protein kinase A C Olivieri, Y Wang, GC Li, M VS, J Kim, BR Stultz, M Neibergall, F Porcelli, ... Elife 9, e55607, 2020 | 27 | 2020 |
ATP-competitive inhibitors modulate the substrate binding cooperativity of a kinase by altering its conformational entropy C Olivieri, GC Li, Y Wang, M VS, C Walker, J Kim, C Camilloni, ... Science Advances 8 (30), eabo0696, 2022 | 26 | 2022 |
Fe (III) docking-activated sites in layered birnessite for efficient water oxidation M Ju, Z Chen, H Zhu, R Cai, Z Lin, Y Chen, Y Wang, J Gao, X Long, ... Journal of the American Chemical Society 145 (20), 11215-11226, 2023 | 24 | 2023 |
Defective internal allosteric network imparts dysfunctional ATP/substrate-binding cooperativity in oncogenic chimera of protein kinase A C Olivieri, C Walker, A Karamafrooz, Y Wang, VS Manu, F Porcelli, ... Communications biology 4 (1), 321, 2021 | 24 | 2021 |
Projected hybrid orbitals: a general QM/MM method Y Wang, J Gao The Journal of Physical Chemistry B 119 (3), 1213-1224, 2015 | 24 | 2015 |
Surface plasmon-enhanced NIR-II fluorescence in a multilayer nanoprobe for through-skull mouse brain imaging L Peng, Y Liu, J Zhang, Z Zhang, Z Liu, X Fang, Y Wang, C Wu ACS Applied Materials & Interfaces 14 (34), 38575-38583, 2022 | 22 | 2022 |
Activation mechanism of Drosophila cryptochrome through an allosteric switch Y Wang, G Veglia, D Zhong, J Gao Science Advances 7 (25), eabg3815, 2021 | 21 | 2021 |