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Feiran Li 李斐然
Feiran Li 李斐然
Tsinghua University, Chalmers Univeristy of Technology
Verifierad e-postadress på sz.tsinghua.edu.cn - Startsida
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A consensus S. cerevisiae metabolic model Yeast8 and its ecosystem for comprehensively probing cellular metabolism
H Lu, F Li, BJ Sánchez, Z Zhu, G Li, I Domenzain, S Marcišauskas, ...
Nature communications 10 (1), 3586, 2019
3422019
Deep learning-based kcat prediction enables improved enzyme-constrained model reconstruction
F Li, L Yuan, H Lu, G Li, Y Chen, MKM Engqvist, EJ Kerkhoven, J Nielsen
Nature Catalysis 5 (8), 662-672, 2022
2312022
Systematic design and in vitro validation of novel one-carbon assimilation pathways
X Yang, Q Yuan, H Luo, F Li, Y Mao, X Zhao, J Du, P Li, X Ju, Y Zheng, ...
Metabolic Engineering 56, 142-153, 2019
852019
SLIMEr: probing flexibility of lipid metabolism in yeast with an improved constraint-based modeling framework
BJ Sánchez, F Li, EJ Kerkhoven, J Nielsen
BMC systems biology 13, 1-9, 2019
542019
Genome-scale modeling of yeast metabolism: retrospectives and perspectives
Y Chen, F Li, J Nielsen
FEMS Yeast Research 22 (1), foac003, 2022
522022
Pathway-Consensus Approach to Metabolic Network Reconstruction for Pseudomonas putida KT2440 by Systematic Comparison of Published Models
Q Yuan, T Huang, P Li, T Hao, F Li, H Ma, Z Wang, X Zhao, T Chen, ...
PloS one 12 (1), e0169437, 2017
502017
Improving recombinant protein production by yeast through genome-scale modeling using proteome constraints
F Li, Y Chen, Q Qi, Y Wang, L Yuan, M Huang, IE Elsemman, A Feizi, ...
Nature communications 13 (1), 2969, 2022
412022
GotEnzymes: an extensive database of enzyme parameter predictions
F Li, Y Chen, M Anton, J Nielsen
Nucleic Acids Research 51 (D1), D583-D586, 2023
392023
Yeast optimizes metal utilization based on metabolic network and enzyme kinetics
Y Chen, F Li, J Mao, Y Chen, J Nielsen
Proceedings of the National Academy of Sciences 118 (12), e2020154118, 2021
352021
Reconstruction, simulation and analysis of enzyme-constrained metabolic models using GECKO Toolbox 3.0
Y Chen, J Gustafsson, A Tafur Rangel, M Anton, I Domenzain, ...
Nature Protocols 19 (3), 629-667, 2024
312024
Yeast metabolic innovations emerged via expanded metabolic network and gene positive selection
H Lu, F Li, L Yuan, I Domenzain, R Yu, H Wang, G Li, Y Chen, B Ji, ...
Molecular Systems Biology 17 (10), e10427, 2021
292021
Different routes of protein folding contribute to improved protein production in Saccharomyces cerevisiae
Q Qi, F Li, R Yu, MKM Engqvist, V Siewers, J Fuchs, J Nielsen
Mbio 11 (6), 10.1128/mbio. 02743-20, 2020
222020
Evaluating accessibility, usability and interoperability of genome-scale metabolic models for diverse yeasts species
I Domenzain, F Li, EJ Kerkhoven, V Siewers
FEMS Yeast Research 21 (1), foab002, 2021
172021
An enzymatic assay for high-throughput screening of cytidine-producing microbial strains
H Dong, Y Liu, X Zu, N Li, F Li, D Zhang
PloS one 10 (3), e0121612, 2015
172015
Sánchez BJet al
H Lu, F Li
A consensus S. cerevisiae metabolic model Yeast8 and its ecosystem for …, 2019
132019
Genome-scale metabolic model analysis indicates low energy production efficiency in marine ammonia-oxidizing archaea
F Li, W Xie, Q Yuan, H Luo, P Li, T Chen, X Zhao, Z Wang, H Ma
AMB Express 8, 1-12, 2018
112018
HGTphyloDetect: facilitating the identification and phylogenetic analysis of horizontal gene transfer
L Yuan, H Lu, F Li, J Nielsen, EJ Kerkhoven
Briefings in Bioinformatics 24 (2), bbad035, 2023
102023
Identification of a new gene yecC involved in threonine export in Escherichia coli
Y Xu, Y Liu, F Li, G Cao, P Zheng, J Sun, J Wen, D Zhang
FEMS Microbiology Letters 364 (17), fnx174, 2017
92017
standard-GEM: standardization of open-source genome-scale metabolic models
M Anton, E Almaas, R Benfeitas, S Benito-Vaquerizo, LM Blank, A Dräger, ...
bioRxiv, 2023.03. 21.512712, 2023
82023
SysBioChalmers/yeast-GEM: yeast 7.6. 0
BJ Sánchez, F Li, H Lu, E Kerkhoven, J Nielsen
Language: en. DOI 10, 2016
82016
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Artiklar 1–20