| De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis BJ Haas, A Papanicolaou, M Yassour, M Grabherr, PD Blood, J Bowden, ... Nature protocols 8 (8), 1494-1512, 2013 | 8333 | 2013 |
| Critical assessment of metagenome interpretation—a benchmark of metagenomics software A Sczyrba, P Hofmann, P Belmann, D Koslicki, S Janssen, J Dröge, ... Nature methods 14 (11), 1063-1071, 2017 | 818 | 2017 |
| The human body at cellular resolution: the NIH Human Biomolecular Atlas Program Caltech-UW TMC Cai Long lcai@ caltech. edu 21 b Shendure Jay 9 Trapnell Cole ... Nature 574 (7777), 187-192, 2019 | 467 | 2019 |
| Direct observation of Bin/amphiphysin/Rvs (BAR) domain-induced membrane curvature by means of molecular dynamics simulations PD Blood, GA Voth Proceedings of the National Academy of Sciences 103 (41), 15068-15072, 2006 | 298 | 2006 |
| Factors influencing local membrane curvature induction by N-BAR domains as revealed by molecular dynamics simulations PD Blood, RD Swenson, GA Voth Biophysical journal 95 (4), 1866-1876, 2008 | 134 | 2008 |
| Membrane remodeling from N-BAR domain interactions: insights from multi-scale simulation GS Ayton, PD Blood, GA Voth Biophysical journal 92 (10), 3595-3602, 2007 | 121 | 2007 |
| Novel transcriptome assembly and improved annotation of the whiteleg shrimp (Litopenaeus vannamei), a dominant crustacean in global seafood mariculture N Ghaffari, A Sanchez-Flores, R Doan, KD Garcia-Orozco, PL Chen, ... Scientific reports 4 (1), 7081, 2014 | 114 | 2014 |
| TCGA expedition: a data acquisition and management system for TCGA data UR Chandran, OP Medvedeva, MM Barmada, PD Blood, A Chakka, ... PloS one 11 (10), e0165395, 2016 | 92 | 2016 |
| Advances and prospects for the Human BioMolecular Atlas Program (HuBMAP) S Jain, L Pei, JM Spraggins, M Angelo, JP Carson, N Gehlenborg, F Ginty, ... Nature cell biology 25 (8), 1089-1100, 2023 | 83 | 2023 |
| NIH SenNet Consortium to map senescent cells throughout the human lifespan to understand physiological health P Lee, C Benz, P Blood, et al. Nature Aging, 1-11, 2022 | 79* | 2022 |
| The non-human primate reference transcriptome resource (NHPRTR) for comparative functional genomics L Pipes, S Li, M Bozinoski, R Palermo, X Peng, P Blood, S Kelly, ... Nucleic acids research 41 (D1), D906-D914, 2013 | 75 | 2013 |
| Implementation of molecular dynamics and its extensions with the coarse-grained UNRES force field on massively parallel systems: Toward millisecond-scale simulations of protein … A Liwo, S Ołdziej, C Czaplewski, DS Kleinerman, P Blood, HA Scheraga Journal of chemical theory and computation 6 (3), 890-909, 2010 | 52 | 2010 |
| Probing the molecular-scale lipid bilayer response to shear flow using nonequilibrium molecular dynamics PD Blood, GS Ayton, GA Voth The Journal of Physical Chemistry B 109 (39), 18673-18679, 2005 | 22 | 2005 |
| The Pacific Biosciences de novo assembled genome dataset from a parthenogenetic New Zealand wild population of the longhorned tick, Haemaphysalis longicornis Neumann, 1901 FD Guerrero, KG Bendele, N Ghaffari, J Guhlin, KR Gedye, KE Lawrence, ... Data in brief 27, 104602, 2019 | 17 | 2019 |
| Leveraging the national cyberinfrastructure for biomedical research R LeDuc, M Vaughn, JM Fonner, M Sullivan, JG Williams, PD Blood, ... Journal of the American Medical Informatics Association 21 (2), 195-199, 2014 | 15 | 2014 |
| Enabling large‐scale next‐generation sequence assembly with Blacklight BM Couger, L Pipes, F Squina, R Prade, A Siepel, R Palermo, MG Katze, ... Concurrency and Computation: Practice and Experience, doi: 10.1002/cpe.3231, 2014 | 13 | 2014 |
| Extending parallel scalability of LAMMPS and multiscale reactive molecular simulations Y Peng, C Knight, P Blood, L Crosby, GA Voth Proceedings of the 1st Conference of the Extreme Science and Engineering …, 2012 | 11 | 2012 |
| Use of accounting concepts to study research: return on investment in XSEDE, a US cyberinfrastructure service CA Stewart, CM Costa, JA Wernert, W Snapp-Childs, M Bland, P Blood, ... Scientometrics 128 (6), 3225-3255, 2023 | 10 | 2023 |
| Raw pacific biosciences and illumina sequencing reads and assembled genome data for the cattle ticks Rhipicephalus microplus and Rhipicephalus annulatus FD Guerrero, N Ghaffari, KG Bendele, RP Metz, CM Dickens, PD Blood, ... Data in Brief 35, 106852, 2021 | 9 | 2021 |
| Blacklight: Coherent Shared Memory for Enabling Science N Nystrom, J Welling, P Blood, EL Goh In J.S. Vetter (Ed.), Contemporary High Performance Computing: From …, 2013 | 8* | 2013 |
