Dominik Gront

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Andrzej KolinskiProfessor, University of WarsawVerifierad e-postadress på chem.uw.edu.pl
Sebastian KmiecikLaboratory of Computational Biology, Biological and Chemical Research Centre, University of WarsawVerifierad e-postadress på chem.uw.edu.pl
Aleksandra E. Badaczewska-DawidResearch Scientist IV, Genome Informatics Facility, Iowa State UniversityVerifierad e-postadress på iastate.edu
Lukasz WieteskaResearch Associate, The Francis Crick InstituteVerifierad e-postadress på pitt.edu
Khajamohiddin SyedProfessor, University of Zululand, South AfricaVerifierad e-postadress på unizulu.ac.za
Michal KolinskiBioinformatics Laboratory, Mossakowski Medical Research Institute Polish Academy of SciencesVerifierad e-postadress på imdik.pan.pl
Maciej BlaszczykUniversity of WarsawVerifierad e-postadress på chem.uw.edu.pl
Jeffrey SkolnickGeorgia Institute of TechnologyVerifierad e-postadress på gatech.edu
Mateusz KurcinskiUniwersytet WarszawskiVerifierad e-postadress på chem.uw.edu.pl
David BakerUniversity of WashingtonVerifierad e-postadress på uw.edu
Charlie E M StraussLos Alamos National LaboratoryVerifierad e-postadress på lanl.gov
Maksim KouzaFaculty of Chemistry, University of WarsawVerifierad e-postadress på chem.uw.edu.pl
Daniel KulpThe Wistar InstituteVerifierad e-postadress på wistar.org
Janusz BujnickiProfessor of Biology, International Institute of Molecular and Cell Biology in WarsawVerifierad e-postadress på iimcb.gov.pl
Andrzej KloczkowskiProfessor of Pediatrics, The Ohio State University, Institute for Genomic Medicine, NCHVerifierad e-postadress på osu.edu
Joanna KargulUniversity of WarsawVerifierad e-postadress på cent.uw.edu.pl
Ulrich H.E. HansmannDepartment of Chemistry and Biochemistry University of OklahomaVerifierad e-postadress på ou.edu
Paweł GniewekRezo TherapeuticsVerifierad e-postadress på rezotx.com
Olga SztatelmanInstitute of Biochemistry and Biophysics, PASVerifierad e-postadress på ibb.waw.pl
Matthew David ZimmermanInstructorVerifierad e-postadress på iwonka.med.virginia.edu

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Dominik Gront

University of Warsaw, Faculty of Chemistry

Verifierad e-postadress på chem.uw.edu.pl - Startsida

bioinformatics modeling of biomacromolecules development of computational methods Rosetta


Titel Sortera efter citat Sortera efter år Sortera efter titel	Citeras av Citeras av	År
Coarse-grained protein models and their applications S Kmiecik, D Gront, M Kolinski, L Wieteska, AE Dawid, A Kolinski Chemical Reviews 116 (14), 7898-7936, 2016	1148	2016
Macromolecular modeling and design in Rosetta: recent methods and frameworks JK Leman, BD Weitzner, SM Lewis, J Adolf-Bryfogle, N Alam, RF Alford, ... Nature methods 17 (7), 665-680, 2020	735	2020
Generalized fragment picking in Rosetta: design, protocols and applications D Gront, DW Kulp, RM Vernon, CEM Strauss, D Baker PloS one 6 (8), e23294, 2011	224	2011
Backbone building from quadrilaterals: a fast and accurate algorithm for protein backbone reconstruction from alpha carbon coordinates D Gront, S Kmiecik, A Kolinski Journal of computational chemistry 28 (9), 1593-1597, 2007	143	2007
Comparison of three Monte Carlo conformational search strategies for a proteinlike homopolymer model: Folding thermodynamics and identification of low-energy structures D Gront, A Kolinski, J Skolnick The Journal of Chemical Physics 113 (12), 5065-5071, 2000	92	2000
Towards the high-resolution protein structure prediction. Fast refinement of reduced models with all-atom force field S Kmiecik, D Gront, A Kolinski BMC structural biology 7 (1), 1-11, 2007	61	2007
Utility library for structural bioinformatics D Gront, A Kolinski Bioinformatics 24 (4), 584-585, 2008	60	2008
BioShell—a package of tools for structural biology computations D Gront, A Kolinski Bioinformatics 22 (5), 621-622, 2006	57	2006
Efficient scheme for optimization of parallel tempering Monte Carlo method D Gront, A Kolinski Journal of Physics: Condensed Matter 19 (3), 036225, 2007	47	2007
HCPM—program for hierarchical clustering of protein models D Gront, A Kolinski Bioinformatics 21 (14), 3179-3180, 2005	43	2005
Type II restriction endonuclease R. Eco29kI is a member of the GIY-YIG nuclease superfamily EM Ibryashkina, MV Zakharova, VB Baskunov, ES Bogdanova, ... BMC structural biology 7, 1-10, 2007	42	2007
A new combination of replica exchange Monte Carlo and histogram analysis for protein folding and thermodynamics D Gront, A Kolinski, J Skolnick The Journal of Chemical Physics 115 (3), 1569-1574, 2001	42	2001
Optimization of protein models D Gront, S Kmiecik, M Blaszczyk, D Ekonomiuk, A Koliński Wiley Interdisciplinary Reviews: Computational Molecular Science 2 (3), 479-493, 2012	41	2012
Better together: Elements of successful scientific software development in a distributed collaborative community J Koehler Leman, BD Weitzner, PD Renfrew, SM Lewis, R Moretti, ... PLoS computational biology 16 (5), e1007507, 2020	38	2020
Contrasting Health Effects of Bacteroidetes and Firmicutes Lies in Their Genomes: Analysis of P450s, Ferredoxins, and Secondary Metabolite Clusters BVZ Nkosi, T Padayachee, D Gront, DR Nelson, K Syed International journal of molecular sciences 23 (9), 5057, 2022	34	2022
From coarse-grained to atomic-level characterization of protein dynamics: transition state for the folding of B domain of protein A S Kmiecik, D Gront, M Kouza, A Kolinski The Journal of Physical Chemistry B 116 (23), 7026-7032, 2012	34	2012
Biofunctionalisation of p-doped silicon with cytochrome c 553 minimises charge recombination and enhances photovoltaic performance of the all-solid-state photosystem I-based … JDJ Olmos, P Becquet, D Gront, J Sar, A Dąbrowski, G Gawlik, ... RSC Advances 7 (75), 47854-47866, 2017	31	2017
Denatured proteins and early folding intermediates simulated in a reduced conformational space S Kmiecik, M Kurcinski, A Rutkowska, D Gront, A Kolinski Acta Biochimica Polonica 53 (1), 131-144, 2005	31	2005
Combining coarse-grained protein models with replica-exchange all-atom molecular dynamics J Wabik, S Kmiecik, D Gront, M Kouza, A Koliński International journal of molecular sciences 14 (5), 9893-9905, 2013	30	2013
SURPASS low-resolution coarse-grained protein modeling AE Dawid, D Gront, A Kolinski Journal of chemical theory and computation 13 (11), 5766-5779, 2017	28	2017

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