| SBML Level 3: an extensible format for the exchange and reuse of biological models SM Keating, D Waltemath, M König, F Zhang, A Dräger, C Chaouiya, ... Molecular Systems Biology 16 (8), e9110, 2020 | 254 | 2020 |
| The critical size is set at a single-cell level by growth rate to attain homeostasis and adaptation F Ferrezuelo, N Colomina, A Palmisano, E Gari, C Gallego, ... Nature communications 3, 1012, 2012 | 222 | 2012 |
| The NCI Transcriptional Pharmacodynamics Workbench: a tool to examine dynamic expression profiling of therapeutic response in the NCI-60 cell line panel A Monks, Y Zhao, C Hose, H Hamed, J Krushkal, J Fang, D Sonkin, ... Cancer Research, canres. 0989.2018, 2018 | 60 | 2018 |
| Molecular Profiling-Based Assignment of Cancer Therapy (NCI-MPACT): A Randomized Multicenter Phase II Trial AP Chen, S Kummar, N Moore, LV Rubinstein, Y Zhao, PM Williams, ... JCO Precision Oncology 5, 133-144, 2021 | 39 | 2021 |
| Calibration of dynamic models of biological systems with KInfer P Lecca, A Palmisano, A Ihekwaba, C Priami European Biophysics Journal 39 (6), 1019-1039, 2010 | 35 | 2010 |
| A new probabilistic generative model of parameter inference in biochemical networks P Lecca, A Palmisano, C Priami, G Sanguinetti Proceedings of the 2009 ACM symposium on Applied Computing, 758-765, 2009 | 25 | 2009 |
| GeneMed: an informatics hub for the coordination of next-generation sequencing studies that support precision oncology clinical trials Y Zhao, EC Polley, MC Li, CJ Lih, A Palmisano, DJ Sims, LV Rubinstein, ... Cancer informatics 14, CIN. S17282, 2015 | 24 | 2015 |
| Molecular genomic features associated with in vitro response of the NCI‐60 cancer cell line panel to natural products J Krushkal, S Negi, LM Yee, JR Evans, T Grkovic, A Palmisano, J Fang, ... Molecular oncology 15 (2), 381-406, 2021 | 23 | 2021 |
| Association of expression of epigenetic molecular factors with DNA methylation and sensitivity to chemotherapeutic agents in cancer cell lines S Vural, A Palmisano, WC Reinhold, Y Pommier, BA Teicher, J Krushkal Clinical Epigenetics 13 (1), 1-23, 2021 | 19 | 2021 |
| Studying irreversible transitions in a model of cell cycle regulation P Ballarini, T Mazza, A Palmisano, A Csikasz-Nagy Electronic Notes in Theoretical Computer Science 232, 39-53, 2009 | 19 | 2009 |
| MutSpliceDB: A database of splice sites variants with RNA‐seq based evidence on effects on splicing A Palmisano, S Vural, Y Zhao, D Sonkin Human Mutation 42 (4), 342-345, 2021 | 18 | 2021 |
| Molecular Network Dynamics of Cell Cycle Control: Transitions to Start and Finish A Csikász-Nagy, A Palmisano, J Zámborszky Cell Cycle Synchronization, 277-291, 2011 | 17 | 2011 |
| Programming biology in BlenX L Dematté, R Larcher, A Palmisano, C Priami, A Romanel Systems Biology for Signaling Networks, 777-820, 2010 | 17 | 2010 |
| From Odes to Language-based, executable models of Biological Systems A Palmisano, I Mura, C Priami Pacific Symposium on Biocomputing 14 (12), 239-250, 2009 | 16 | 2009 |
| Molecular Network Dynamics of Cell Cycle Control: Periodicity of Start and Finish A Palmisano, J Zámborszky, C Oguz, A Csikász-Nagy Cell Cycle Synchronization: Methods and Protocols, 331-349, 2017 | 13 | 2017 |
| A Stochastic Model Correctly Predicts Changes in Budding Yeast Cell Cycle Dynamics upon Periodic Expression of CLN2 C Oguz, A Palmisano, T Laomettachit, LT Watson, WT Baumann, JJ Tyson PloS one 9 (5), e96726, 2014 | 13 | 2014 |
| A Stochastic Model Correctly Predicts Changes in Budding Yeast Cell Cycle C Oguz, A Palmisano, T Laomettachit, LT Watson, WT Baumann | 13* | 2014 |
| Multistate Model Builder (MSMB): a flexible editor for compact biochemical models A Palmisano, S Hoops, LT Watson, TC Jones Jr, JJ Tyson, CA Shaffer BMC systems biology 8 (1), 1-13, 2014 | 10 | 2014 |
| Deducing chemical reaction rate constants and their regions of confidence from noisy measurements of time series of concentration P Lecca, A Palmisano, C Priami Computer Modelling and Simulation, 2009. UKSIM'09. 11th International …, 2009 | 10 | 2009 |
| OpenGeneMed: a portable, flexible and customizable informatics hub for the coordination of next-generation sequencing studies in support of precision medicine trials A Palmisano, Y Zhao, MC Li, EC Polley, RM Simon Briefings in Bioinformatics, bbw059, 2016 | 9 | 2016 |