| EffectorP: predicting fungal effector proteins from secretomes using machine learning J Sperschneider, DM Gardiner, PN Dodds, F Tini, L Covarelli, KB Singh, ... New Phytologist 210 (2), 743-761, 2016 | 434 | 2016 |
| LOCALIZER: subcellular localization prediction of both plant and effector proteins in the plant cell J Sperschneider, AM Catanzariti, K DeBoer, B Petre, DM Gardiner, ... Scientific reports 7 (1), 44598, 2017 | 404 | 2017 |
| Improved prediction of fungal effector proteins from secretomes with EffectorP 2.0 J Sperschneider, PN Dodds, DM Gardiner, KB Singh, JM Taylor Molecular plant pathology 19 (9), 2094-2110, 2018 | 386 | 2018 |
| EffectorP 3.0: prediction of apoplastic and cytoplasmic effectors in fungi and oomycetes J Sperschneider, PN Dodds Molecular plant-microbe interactions 35 (2), 146-156, 2022 | 356 | 2022 |
| Loss of AvrSr50 by somatic exchange in stem rust leads to virulence for Sr50 resistance in wheat J Chen, NM Upadhyaya, D Ortiz, J Sperschneider, F Li, C Bouton, ... Science 358 (6370), 1607-1610, 2017 | 228 | 2017 |
| Advances and challenges in computational prediction of effectors from plant pathogenic fungi J Sperschneider, PN Dodds, DM Gardiner, JM Manners, KB Singh, ... PLoS pathogens 11 (5), e1004806, 2015 | 200 | 2015 |
| Genome Sequencing and Comparative Genomics of the Broad Host-Range Pathogen Rhizoctonia solani AG8 JK Hane, JP Anderson, AH Williams, J Sperschneider, KB Singh PLoS genetics 10 (5), e1004281, 2014 | 193 | 2014 |
| ApoplastP: prediction of effectors and plant proteins in the apoplast using machine learning J Sperschneider, PN Dodds, KB Singh, JM Taylor New Phytologist 217 (4), 1764-1778, 2018 | 190 | 2018 |
| Emergence of the Ug99 lineage of the wheat stem rust pathogen through somatic hybridisation F Li, NM Upadhyaya, J Sperschneider, O Matny, H Nguyen-Phuc, R Mago, ... Nature communications 10 (1), 5068, 2019 | 154 | 2019 |
| Comparative genomics and prediction of conditionally dispensable sequences in legume–infecting Fusarium oxysporum formae speciales facilitates identification … AH Williams, M Sharma, LF Thatcher, S Azam, JK Hane, J Sperschneider, ... BMC genomics 17, 1-24, 2016 | 127 | 2016 |
| A Near-Complete Haplotype-Phased Genome of the Dikaryotic Wheat Stripe Rust Fungus Puccinia striiformis f. sp. tritici Reveals High Interhaplotype Diversity B Schwessinger, J Sperschneider, WS Cuddy, DP Garnica, ME Miller, ... MBio 9 (1), 10.1128/mbio. 02275-17, 2018 | 120 | 2018 |
| DotKnot: pseudoknot prediction using the probability dot plot under a refined energy model J Sperschneider, A Datta Nucleic acids research 38 (7), e103-e103, 2010 | 104 | 2010 |
| Genome-Wide Analysis in Three Fusarium Pathogens Identifies Rapidly Evolving Chromosomes and Genes Associated with Pathogenicity J Sperschneider, DM Gardiner, LF Thatcher, R Lyons, KB Singh, ... Genome biology and evolution 7 (6), 1613-1627, 2015 | 98 | 2015 |
| Comparative genomics of Australian isolates of the wheat stem rust pathogen Puccinia graminis f. sp. tritici reveals extensive polymorphism in candidate effector … NM Upadhyaya, DP Garnica, H Karaoglu, J Sperschneider, A Nemri, B Xu, ... Frontiers in plant science 5, 759, 2015 | 95 | 2015 |
| Genomics accelerated isolation of a new stem rust avirulence gene–wheat resistance gene pair NM Upadhyaya, R Mago, V Panwar, T Hewitt, M Luo, J Chen, ... Nature Plants 7 (9), 1220-1228, 2021 | 94 | 2021 |
| Machine learning in plant–pathogen interactions: empowering biological predictions from field scale to genome scale J Sperschneider New Phytologist 228 (1), 35-41, 2020 | 87 | 2020 |
| Evaluation of secretion prediction highlights differing approaches needed for oomycete and fungal effectors J Sperschneider, AH Williams, JK Hane, KB Singh, JM Taylor Frontiers in plant science 6, 1168, 2015 | 76 | 2015 |
| Comparative secretome analysis of Rhizoctonia solani isolates with different host ranges reveals unique secretomes and cell death inducing effectors JP Anderson, J Sperschneider, J Win, B Kidd, K Yoshida, J Hane, ... Scientific reports 7 (1), 10410, 2017 | 70 | 2017 |
| Long reads and Hi‐C sequencing illuminate the two‐compartment genome of the model arbuscular mycorrhizal symbiont Rhizophagus irregularis G Yildirir, J Sperschneider, M Malar C, ECH Chen, W Iwasaki, C Cornell, ... New Phytologist 233 (3), 1097-1107, 2022 | 64 | 2022 |
| Diversifying selection in the wheat stem rust fungus acts predominantly on pathogen-associated gene families and reveals candidate effectors J Sperschneider, H Ying, PN Dodds, DM Gardiner, NM Upadhyaya, ... Frontiers in plant science 5, 372, 2014 | 64 | 2014 |
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