Francesca Finotello

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Zlatko TrajanoskiBiocenter, Institute of Bioinformatics, Medical University of InnsbruckVerifierad e-postadress på i-med.ac.at
Dietmar RiederInstitute of Bioinformatics, Medical University of InnsbruckVerifierad e-postadress på i-med.ac.at
Barbara Di CamilloUniversity of Padova, Information Engineering DepartmentVerifierad e-postadress på dei.unipd.it
Hubert HacklMedical University of InnsbruckVerifierad e-postadress på i-med.ac.at
Gregor SturmBoehringer IngelheimVerifierad e-postadress på boehringer-ingelheim.com
Mirjana EfremovaGroup Leader / Barts Cancer InstituteVerifierad e-postadress på qmul.ac.uk
Markus ListData Science in Systems Biology, School of Life Sciences, Technical University of MunichVerifierad e-postadress på tum.de
Enrico LavezzoDepartment of Molecular Medicine, University of Padova, ItalyVerifierad e-postadress på unipd.it
Luisa BarzonUniversity of Padova, Padova, ItalyVerifierad e-postadress på unipd.it
Stefano ToppoDepartment of Molecular MedicineVerifierad e-postadress på unipd.it
Mihaela AngelovaThe Francis Crick InsituteVerifierad e-postadress på crick.ac.uk
Florent PetitprezUniversity of Edinburgh, Institute for Regeneration and Repair, Centre for Reproductive HealthVerifierad e-postadress på ed.ac.uk
wolf h fridmancentre de recherche des cordeliersVerifierad e-postadress på crc.jussieu.fr
Doris WilflingsederVetmeduni Vienna, Ignaz Semmelweis InstituteVerifierad e-postadress på vetmeduni.ac.at
Wilfried Posch, Assoc.-Prof. Emerging...Medical University of Innsbruck Institute of Hygiene and Medical MicrobiologyVerifierad e-postadress på i-med.ac.at
Monica Valeria EstradaUCSDVerifierad e-postadress på ucsd.edu
Tatsiana AneichykMassachusetts General HospitalVerifierad e-postadress på mgh.harvard.edu
Jan BaumbachInstitute for Computational Systems Biology, University of HamburgVerifierad e-postadress på cosy.bio
Paolo FontanaEdmund Mach FoundationVerifierad e-postadress på fmach.it
Marco FaldaUniversity of PadovaVerifierad e-postadress på unipd.it

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Francesca Finotello

University of Innsbruck, Austria

Verifierad e-postadress på uibk.ac.at - Startsida

bioinformatics next-generation sequencing RNA-seq cancer immunology precision medicine


Titel Sortera efter citat Sortera efter år Sortera efter titel	Citeras av Citeras av	År
Pan-cancer immunogenomic analyses reveal genotype-immunophenotype relationships and predictors of response to checkpoint blockade P Charoentong, F Finotello, M Angelova, C Mayer, M Efremova, D Rieder, ... Cell reports 18 (1), 248-262, 2017	3721	2017
Molecular and pharmacological modulators of the tumor immune contexture revealed by deconvolution of RNA-seq data F Finotello, C Mayer, C Plattner, G Laschober, D Rieder, H Hackl, ... Genome medicine 11 (1), 34, 2019	1148	2019
Comprehensive evaluation of transcriptome-based cell-type quantification methods for immuno-oncology G Sturm, F Finotello, F Petitprez, JD Zhang, J Baumbach, WH Fridman, ... Bioinformatics 35 (14), i436-i445, 2019	760	2019
Global genomic and transcriptomic analysis of human pancreatic islets reveals novel genes influencing glucose metabolism J Fadista, P Vikman, EO Laakso, IG Mollet, JL Esguerra, J Taneera, ... Proceedings of the National Academy of Sciences 111 (38), 13924-13929, 2014	499	2014
Quantifying tumor-infiltrating immune cells from transcriptomics data F Finotello, Z Trajanoski Cancer Immunology, Immunotherapy 67 (7), 1031-1040, 2018	371	2018
Measuring differential gene expression with RNA-seq: challenges and strategies for data analysis F Finotello, B Di Camillo Briefings in functional genomics 14 (2), 130-142, 2015	322	2015
Targeting immune checkpoints potentiates immunoediting and changes the dynamics of tumor evolution M Efremova, D Rieder, V Klepsch, P Charoentong, F Finotello, H Hackl, ... Nature Communications 9 (1), 32, 2018	298	2018
Mitochondrial DNA drives abscopal responses to radiation that are inhibited by autophagy T Yamazaki, A Kirchmair, AI Sato, A Buqué, M Rybstein, G Petroni, N Bloy, ... Nature immunology 21 (10), 1160-1171, 2020	293	2020
Computational genomics tools for dissecting tumour-immune cell interactions H Hackl, P Charoentong, F Finotello, Z Trajanoski Nature Reviews Genetics 17 (8), 441-458, 2016	280	2016
Inferring causal molecular networks: empirical assessment through a community-based effort SM Hill, LM Heiser, T Cokelaer, M Unger, NK Nesser, DE Carlin, Y Zhang, ... Nature Methods 13 (4), 310-318, 2016	261	2016
Neoantigens generated by individual mutations and their role in cancer immunity and immunotherapy M Efremova, F Finotello, D Rieder, Z Trajanoski Frontiers in immunology 8, 1679, 2017	228	2017
High-resolution single-cell atlas reveals diversity and plasticity of tissue-resident neutrophils in non-small cell lung cancer S Salcher, G Sturm, L Horvath, G Untergasser, C Kuempers, G Fotakis, ... Cancer cell 40 (12), 1503-1520. e8, 2022	227	2022
Pancancer Immunogenomic Analyses Reveal Genotype-Immunophenotype Relationships and Predictors of Response to Checkpoint Blockade. Cell Rep. 2017; 18: 248–62 P Charoentong, F Finotello, M Angelova, C Mayer, M Efremova, D Rieder, ...	217	2010
Immunedeconv: an R package for unified access to computational methods for estimating immune cell fractions from bulk RNA-sequencing data G Sturm, F Finotello, M List Bioinformatics for cancer immunotherapy: methods and protocols, 223-232, 2020	197	2020
Deconvoluting tumor-infiltrating immune cells from RNA-seq data using quanTIseq C Plattner, F Finotello, D Rieder Methods in enzymology 636, 261-285, 2020	178	2020
A genome-wide association study of diabetic kidney disease in subjects with type 2 diabetes NR Van Zuydam, E Ahlqvist, N Sandholm, H Deshmukh, NW Rayner, ... Diabetes 67 (7), 1414-1427, 2018	175	2018
Deviations of the immune cell landscape between healthy liver and hepatocellular carcinoma N Rohr-Udilova, F Klinglmüller, R Schulte-Hermann, J Stift, M Herac, ... Scientific Reports 8 (1), 6220, 2018	175	2018
Scirpy: a Scanpy extension for analyzing single-cell T-cell receptor-sequencing data G Sturm, T Szabo, G Fotakis, M Haider, D Rieder, Z Trajanoski, F Finotello Bioinformatics 36 (18), 4817-4818, 2020	167	2020
Measuring the diversity of the human microbiota with targeted next-generation sequencing F Finotello, E Mastrorilli, B Di Camillo Briefings in bioinformatics 19 (4), 679-692, 2018	162	2018
Next-generation computational tools for interrogating cancer immunity F Finotello, D Rieder, H Hackl, Z Trajanoski Nature Reviews Genetics, 1-23, 2019	153	2019

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