Alexandros Stamatakis

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Oleksiy M. KozlovHeidelberg Institute for Theoretical StudiesVerifierad e-postadress på h-its.org
Simon A BergerHeidelberg Institute for Theoretical Studies (HITS gGmbH)Verifierad e-postadress på h-its.org
Kassian KobertUni BielefeldVerifierad e-postadress på uni-bielefeld.de
Diego DarribaUniversity of A Coruña, CITIC, Computer Architecture GroupVerifierad e-postadress på udc.es
Thomas LudwigProfessor Computer ScienceVerifierad e-postadress på org.dkrz.de
Lucas CzechGlobe Institute, University of CopenhagenVerifierad e-postadress på sund.ku.dk
Andre J. AbererVerifierad e-postadress på aberer.io
Pavlos PavlidisFoundation of Research and Technology - Hellas (ICS)Verifierad e-postadress på ics.forth.gr
Nikolaos AlachiotisUniversity of TwenteVerifierad e-postadress på utwente.nl
Jiajie ZhangGSKVerifierad e-postadress på gsk.com
Fernando Izquierdo-CarrascoAmazon Web ServicesVerifierad e-postadress på amazon.com
Pierre BarberaVerifierad e-postadress på h-its.org
Paschalia KapliResearch Leader, Natural History Museum, LondonVerifierad e-postadress på nhm.ac.uk
Olaf R.P. Bininda-EmondsProfessor of Molecular Systematics, University of OldenburgVerifierad e-postadress på uni-oldenburg.de
Nicholas D. PattengaleVerifierad e-postadress på cs.unm.edu
Micah DunthornNatural History Museum, University of OsloVerifierad e-postadress på nhm.uio.no
Frédéric MahéCIRAD, UMR PHIM, F-34398, Montpellier, FranceVerifierad e-postadress på cirad.fr
Stephen A. SmithProfessor, University of MichiganVerifierad e-postadress på umich.edu
Bernard M.E. MoretISCB Fellow, Professor emeritus, Computer & Communication Sciences, EPFLVerifierad e-postadress på epfl.ch
Karen MeusemannLeibniz Institute for the Analysis of Biodiversity Change (LIB), Museum Koenig (ZFMK)Verifierad e-postadress på karen-meusemann.de

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Alexandros Stamatakis

Foundation for Research and Technology - Hellas, HITS gGmbH, KIT

Verifierad e-postadress på ics.forth.gr - Startsida

Algorithms Parallel Computing Bioinformatics Phylogenetics Evolutionary Biology


Titel Sortera efter citat Sortera efter år Sortera efter titel	Citeras av Citeras av	År
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies A Stamatakis Bioinformatics 30 (9), 1312-1313, 2014	32342	2014
RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models A Stamatakis Bioinformatics 22 (21), 2688-2690, 2006	17796	2006
A rapid bootstrap algorithm for the RAxML web servers A Stamatakis, P Hoover, J Rougemont Systematic biology 57 (5), 758-771, 2008	8171	2008
ARB: a software environment for sequence data W Ludwig, O Strunk, R Westram, L Richter, H Meier, Yadhukumar, ... Nucleic acids research 32 (4), 1363-1371, 2004	6809	2004
PEAR: a fast and accurate Illumina Paired-End reAd mergeR J Zhang, K Kobert, T Flouri, A Stamatakis Bioinformatics 30 (5), 614-620, 2014	4436	2014
RAxML-NG: a fast, scalable and user-friendly tool for maximum likelihood phylogenetic inference AM Kozlov, D Darriba, T Flouri, B Morel, A Stamatakis Bioinformatics 35 (21), 4453-4455, 2019	3238	2019
A general species delimitation method with applications to phylogenetic placements J Zhang, P Kapli, P Pavlidis, A Stamatakis Bioinformatics 29 (22), 2869-2876, 2013	2834	2013
Phylogenomics resolves the timing and pattern of insect evolution B Misof, S Liu, K Meusemann, RS Peters, A Donath, C Mayer, ... Science 346 (6210), 763-767, 2014	2720	2014
Whole-genome analyses resolve early branches in the tree of life of modern birds ED Jarvis, S Mirarab, AJ Aberer, B Li, P Houde, C Li, SYW Ho, ... Science 346 (6215), 1320-1331, 2014	2021	2014
RAxML-III: a fast program for maximum likelihood-based inference of large phylogenetic trees A Stamatakis, T Ludwig, H Meier Bioinformatics 21 (4), 456-463, 2005	1729	2005
ModelTest-NG: a new and scalable tool for the selection of DNA and protein evolutionary models D Darriba, D Posada, AM Kozlov, A Stamatakis, B Morel, T Flouri Molecular biology and evolution 37 (1), 291-294, 2020	1590	2020
Eleven grand challenges in single-cell data science D Lähnemann, J Köster, E Szczurek, DJ McCarthy, SC Hicks, ... Genome biology 21, 1-35, 2020	1173	2020
How many bootstrap replicates are necessary? ND Pattengale, M Alipour, ORP Bininda-Emonds, BME Moret, ... Journal of Computational Biology 17 (3), 337-354, 2010	905	2010
Multi-rate Poisson tree processes for single-locus species delimitation under maximum likelihood and Markov chain Monte Carlo P Kapli, S Lutteropp, J Zhang, K Kobert, P Pavlidis, A Stamatakis, T Flouri Bioinformatics 33 (11), 1630-1638, 2017	879	2017
Assessing the root of bilaterian animals with scalable phylogenomic methods A Hejnol, M Obst, A Stamatakis, M Ott, GW Rouse, GD Edgecombe, ... Proceedings of the Royal Society B: Biological Sciences 276 (1677), 4261-4270, 2009	857	2009
Selecting optimal partitioning schemes for phylogenomic datasets R Lanfear, B Calcott, D Kainer, C Mayer, A Stamatakis BMC Evolutionary Biology 14 (1), 82, 2014	748	2014
EPA-ng: massively parallel evolutionary placement of genetic sequences P Barbera, AM Kozlov, L Czech, B Morel, D Darriba, T Flouri, ... Systematic biology 68 (2), 365-369, 2019	561	2019
Frontiers: The iPlant Collaborative: Cyberinfrastructure for Plant Biology SA Goff, M Vaughn, S McKay, E Lyons, AE Stapleton, D Gessler, ... Frontiers in Plant Genetics And Genomics 2, 2011	548*	2011
Metagenomic species profiling using universal phylogenetic marker genes S Sunagawa, DR Mende, G Zeller, F Izquierdo-Carrasco, SA Berger, ... Nature methods 10 (12), 1196-1199, 2013	539	2013
Performance, accuracy, and web server for evolutionary placement of short sequence reads under maximum likelihood SA Berger, D Krompass, A Stamatakis Systematic biology 60 (3), 291, 2011	538	2011

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