Thomas Hamelryck

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Remy LorisHoogleraar, VUBVerifierad e-postadress på vub.be
Jesper Ferkinghoff-BorgAssociate Professor, Research Director, Novo Nordisk A/SVerifierad e-postadress på novonordisk.com
Wouter BoomsmaProfessor, Department of Computer Science, University of CopenhagenVerifierad e-postadress på di.ku.dk
Kanti MardiaSENIOR RESARCH PROFESSOR ,UNIVERSITY OF LEEDS AND UNIVERSITY OF OXFORDVerifierad e-postadress på leeds.ac.uk
Jes FrellsenAssociate Professor, Technical University of Denmark (DTU)Verifierad e-postadress på dtu.dk
Julie BouckaertUnite de Glycobiologie Structurale et FonctionelleVerifierad e-postadress på univ-lille.fr
Iddo FriedbergAssociate Professor of Bioinformatics, Iowa State UniversityVerifierad e-postadress på iastate.edu
Tiago AntaoUniversity of MontanaVerifierad e-postadress på cam.ac.uk
Peter CockUniversity of StrathclydeVerifierad e-postadress på strath.ac.uk
Christian AndreettaUniv. of Copenhagen, Denmark, and Uni Computing, Uni Research, NorwayVerifierad e-postadress på uni.no
Simon OlssonChalmers University of TechnologyVerifierad e-postadress på chalmers.se
Anders KroghDepartment of Computer Science and Center for Health Data Science, University of CopenhagenVerifierad e-postadress på di.ku.dk
Tim HarderResearch Scientist at Philips ResearchVerifierad e-postadress på philips.com
Kristoffer Enøe JohanssonDepartment of Biology, University of CopenhagenVerifierad e-postadress på bio.ku.dk
Charles C TaylorUniversity of LeedsVerifierad e-postadress på maths.leeds.ac.uk
Kresten Lindorff-LarsenLinderstrøm-Lang Centre for Protein Science, Department of Biology, University of CopenhagenVerifierad e-postadress på bio.ku.dk
Lubomir D. AntonovPhD Fellow, University of CopenhagenVerifierad e-postadress på binf.ku.dk
Jan H. JensenUniversity of CopenhagenVerifierad e-postadress på chem.ku.dk
Kasper StovgaardBioinformatics Centre, University of CopenhagenVerifierad e-postadress på ihfood.dk
Pengfei TianPrincipal Scientist, Lila Sciences / Flagship Labs 97, Inc. (FL97)Verifierad e-postadress på nih.gov

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Thomas Hamelryck

Professor in Machine Learning, BIO/DIKU, University of Copenhagen

Verifierad e-postadress på bio.ku.dk - Startsida

Deep probabilistic programming Bayesian statistics Bioinformatics


Titel Sortera efter citat Sortera efter år Sortera efter titel	Citeras av Citeras av	År
Biopython: freely available Python tools for computational molecular biology and bioinformatics PJA Cock, T Antao, JT Chang, BA Chapman, CJ Cox, A Dalke, I Friedberg, ... Bioinformatics 25 (11), 1422, 2009	5565	2009
Legume lectin structure R Loris, T Hamelryck, J Bouckaert, L Wyns Biochimica et biophysica acta (BBA)-Protein structure and molecular …, 1998	779	1998
PDB file parser and structure class implemented in Python T Hamelryck, B Manderick Bioinformatics 19 (17), 2308-2310, 2003	309	2003
A generative, probabilistic model of local protein structure W Boomsma, KV Mardia, CC Taylor, J Ferkinghoff-Borg, A Krogh, ... Proceedings of the National Academy of Sciences 105 (26), 8932-8937, 2008	210	2008
An amino acid has two sides: a new 2D measure provides a different view of solvent exposure T Hamelryck Proteins: Structure, Function, and Bioinformatics 59 (1), 38-48, 2005	191	2005
Carbohydrate binding, quaternary structure and a novel hydrophobic binding site in two legume lectin oligomers fromDolichos biflorus TW Hamelryck, R Loris, J Bouckaert, MH Dao-Thi, G Strecker, A Imberty, ... Journal of molecular biology 286 (4), 1161-1177, 1999	169	1999
The crystallographic structure of phytohemagglutinin-L TW Hamelryck, MH Dao-Thi, F Poortmans, MJ Chrispeels, L Wyns, ... Journal of Biological Chemistry 271 (34), 20479-20485, 1996	163	1996
Sampling realistic protein conformations using local structural bias T Hamelryck, JT Kent, A Krogh PLoS Computational Biology 2 (9), e131, 2006	155	2006
A probabilistic model of RNA conformational space J Frellsen, I Moltke, M Thiim, KV Mardia, J Ferkinghoff-Borg, T Hamelryck PLoS computational biology 5 (6), e1000406, 2009	132	2009
Novel structures of plant lectins and their complexes with carbohydrates J Bouckaert, T Hamelryck, L Wyns, R Loris Current opinion in structural biology 9 (5), 572-577, 1999	117	1999
Potentials of mean force for protein structure prediction vindicated, formalized and generalized T Hamelryck, M Borg, M Paluszewski, J Paulsen, J Frellsen, C Andreetta, ... PloS one 5 (11), e13714, 2010	100	2010
NMR, molecular modeling, and crystallographic studies of lentil lectin-sucrose interaction F Casset, T Hamelryck, R Loris, JR Brisson, C Tellier, MH Dao-Thi, ... Journal of Biological Chemistry 270 (43), 25619-25628, 1995	83	1995
Beyond rotamers: a generative, probabilistic model of side chains in proteins T Harder, W Boomsma, M Paluszewski, J Frellsen, KE Johansson, ... BMC bioinformatics 11, 1-13, 2010	82	2010
An evolutionary method for learning HMM structure: prediction of protein secondary structure KJ Won, T Hamelryck, A Prügel-Bennett, A Krogh BMC bioinformatics 8, 1-13, 2007	71	2007
Calculation of accurate small angle X-ray scattering curves from coarse-grained protein models K Stovgaard, C Andreetta, J Ferkinghoff-Borg, T Hamelryck BMC bioinformatics 11, 1-14, 2010	70	2010
The crystal structures of Man (α1–3) Man (α1-O) Me and Man (α1–6) Man (α1-O) Me in complex with concanavalin A J Bouckaert, TW Hamelryck, L Wyns, R Loris Journal of Biological Chemistry 274 (41), 29188-29195, 1999	70	1999
Bayesian inference of protein ensembles from SAXS data LD Antonov, S Olsson, W Boomsma, T Hamelryck Physical Chemistry Chemical Physics 18 (8), 5832-5838, 2016	65	2016
Inference of structure ensembles of flexible biomolecules from sparse, averaged data S Olsson, J Frellsen, W Boomsma, KV Mardia, T Hamelryck PloS one 8 (11), e79439, 2013	62	2013
Bayesian methods in structural bioinformatics T Hamelryck, K Mardia, J Ferkinghoff-Borg Springer, 2012	59	2012
Weak protein-protein interactions in lectins: the crystal structure of a vegetative lectin from the legume Dolichos biflorus L Buts, MH Dao-Thi, R Loris, L Wyns, M Etzler, T Hamelryck Journal of Molecular Biology 309 (1), 193-201, 2001	53	2001

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