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Pavel Buslaev
Pavel Buslaev
Verifierad e-postadress på jyu.fi - Startsida
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Mechanism of transmembrane signaling by sensor histidine kinases
I Gushchin, I Melnikov, V Polovinkin, A Ishchenko, A Yuzhakova, ...
Science 356 (6342), eaah6345, 2017
1662017
Scalable constant pH molecular dynamics in GROMACS
N Aho, P Buslaev, A Jansen, P Bauer, G Groenhof, B Hess
Journal of Chemical Theory and Computation 18 (10), 6148-6160, 2022
902022
Plasmons in waveguide structures formed by two graphene layers
PI Buslaev, IV Iorsh, IV Shadrivov, PA Belov, YS Kivshar
JETP letters 97, 535-539, 2013
732013
Headgroup structure and cation binding in phosphatidylserine lipid bilayers
H Antila, P Buslaev, F Favela-Rosales, TM Ferreira, I Gushchin, ...
The Journal of Physical Chemistry B 123 (43), 9066-9079, 2019
622019
Structure of the light‐driven sodium pump KR 2 and its implications for optogenetics
I Gushchin, V Shevchenko, V Polovinkin, V Borshchevskiy, P Buslaev, ...
The FEBS journal 283 (7), 1232-1238, 2016
602016
Deeply subwavelength electromagnetic Tamm states in graphene metamaterials
D Smirnova, P Buslaev, I Iorsh, IV Shadrivov, PA Belov, YS Kivshar
Physical Review B 89 (24), 245414, 2014
452014
Best practices in constant pH MD simulations: accuracy and sampling
P Buslaev, N Aho, A Jansen, P Bauer, B Hess, G Groenhof
Journal of Chemical Theory and Computation 18 (10), 6134-6147, 2022
442022
Principal component analysis of lipid molecule conformational changes in molecular dynamics simulations
P Buslaev, V Gordeliy, S Grudinin, I Gushchin
Journal of chemical theory and computation 12 (3), 1019-1028, 2016
412016
Inverse conformational selection in lipid–protein binding
A Bacle, P Buslaev, R Garcia-Fandino, F Favela-Rosales, ...
Journal of the American Chemical Society 143 (34), 13701-13709, 2021
322021
A thermostable flavin-based fluorescent protein from Chloroflexus aggregans: a framework for ultra-high resolution structural studies
VV Nazarenko, A Remeeva, A Yudenko, K Kovalev, A Dubenko, ...
Photochemical & Photobiological Sciences 18, 1793-1805, 2019
312019
Mechanism of transmembrane signaling by sensor histidine kinases. Science 356: eaah6345
I Gushchin, I Melnikov, V Polovinkin, A Ishchenko, A Yuzhakova, ...
Signal-transduction mechanism of a transmembrane histidine kinase revealed …, 2017
212017
Effects of coarse graining and saturation of hydrocarbon chains on structure and dynamics of simulated lipid molecules
P Buslaev, I Gushchin
Scientific reports 7 (1), 11476, 2017
182017
Overlay databank unlocks data-driven analyses of biomolecules for all
AM Kiirikki, HS Antila, LS Bort, P Buslaev, F Favela-Rosales, TM Ferreira, ...
Nature Communications 15 (1), 1136, 2024
172024
Principal component analysis highlights the influence of temperature, curvature and cholesterol on conformational dynamics of lipids
P Buslaev, K Mustafin, I Gushchin
Biochimica et Biophysica Acta (BBA)-Biomembranes 1862 (7), 183253, 2020
122020
phbuilder: a tool for efficiently setting up constant pH molecular dynamics simulations in GROMACS
A Jansen, N Aho, G Groenhof, P Buslaev, B Hess
Journal of Chemical Information and Modeling 64 (3), 567-574, 2024
102024
NMRlipids Databank makes data-driven analysis of biomembrane properties accessible for all
A Kiirikki, H Antila, L Bort, P Buslaev, F Fernando, TM Ferreira, P Fuchs, ...
102023
Assembly of spinach chloroplast ATP synthase rotor ring protein-lipid complex
O Novitskaia, P Buslaev, I Gushchin
Frontiers in Molecular Biosciences 6, 135, 2019
92019
Do all paths lead to Rome? How reliable is umbrella sampling along a single path?
N Aho, G Groenhof, P Buslaev
Journal of Chemical Theory and Computation 20 (15), 6674-6686, 2024
72024
Unraveling viral drug targets: a deep learning-based approach for the identification of potential binding sites
P Popov, R Kalinin, P Buslaev, I Kozlovskii, M Zaretckii, D Karlov, ...
Briefings in Bioinformatics 25 (1), bbad459, 2024
42024
gmXtal: Cooking Crystals with GROMACS
P Buslaev, G Groenhof
The Protein Journal 43 (2), 200-206, 2024
32024
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Artiklar 1–20