Luke R. Thompson

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Rob KnightWolfe Family Chair at Rady Children's; Director, Center for Microbiome Innovation; Professor, UCSDVerifierad e-postadress på ucsd.edu
James T. MortonVerifierad e-postadress på gutzanalytics.com
Sallie W ChisholmInstitute Professor, Massachusetts Institute of TechnologyVerifierad e-postadress på mit.edu
Zhenjiang Zech Xustate key lab of food science and resources, nuVerifierad e-postadress på ucsd.edu
Ulrich StinglAsst Professor for Microbial Ecology, University of FloridaVerifierad e-postadress på ufl.edu
Kelly D. GoodwinNOAAVerifierad e-postadress på noaa.gov
Daniel McDonaldAmerican Gut, Knight Lab, Department of Pediatrics, UCSDVerifierad e-postadress på ucsd.edu
J Gregory CaporasoNorthern Arizona UniversityVerifierad e-postadress på nau.edu
Anupriya TripathiPrincipal AI Scientist at Prescient Design (Genentech)Verifierad e-postadress på gene.com
Antonio GonzálezProgrammer Analyst, UC San DiegoVerifierad e-postadress på ucsd.edu
Jack A GilbertUniversity of California, San DiegoVerifierad e-postadress på ucsd.edu
Matthew B SullivanDistinguished Professor, Ohio State University / Founding Director, Center of Microbiome ScienceVerifierad e-postadress på osu.edu
Embriette HydeFreelance Science Writer and Research ConsultantVerifierad e-postadress på drhydenotjekyll.com
Debbie LindellFaculty of Biology, Technion - Israel Institute of TechnologyVerifierad e-postadress på technion.ac.il
M. Fauzi HaroonHarvard UniversityVerifierad e-postadress på fas.harvard.edu
Ahmed A. ShiblResearch Associate, NYUADVerifierad e-postadress på nyu.edu
Libusha KellyAlbert Einstein College of MedicineVerifierad e-postadress på einstein.yu.edu
David K. NgugiResearch Group LeaderVerifierad e-postadress på geomar.de
Alison VrbanacSiolta TherapeuticsVerifierad e-postadress på sioltatherapeutics.com
Austin Swafford, PhDPresident, IBRAVerifierad e-postadress på biomedalliance.org

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Luke R. Thompson

Associate Research Professor, NOAA Northern Gulf Institute

Verifierad e-postadress på noaa.gov - Startsida

Microbial Ecology Metagenomics


Titel Sortera efter citat Sortera efter år Sortera efter titel	Citeras av Citeras av	År
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2 E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ... Nature biotechnology 37 (8), 852-857, 2019	17425	2019
A communal catalogue reveals Earth’s multiscale microbial diversity LR Thompson, JG Sanders, D McDonald, A Amir, J Ladau, KJ Locey, ... Nature 551 (7681), 2017	2527	2017
Best practices for analysing microbiomes R Knight, A Vrbanac, BC Taylor, A Aksenov, C Callewaert, J Debelius, ... Nature Reviews Microbiology 16 (7), 410-422, 2018	1686	2018
Deblur rapidly resolves single-nucleotide community sequence patterns A Amir, D McDonald, JA Navas-Molina, E Kopylova, JT Morton, ZZ Xu, ... mSystems 2 (2), e00191-16, 2017	1524	2017
Species-level functional profiling of metagenomes and metatranscriptomes EA Franzosa, LJ McIver, G Rahnavard, LR Thompson, M Schirmer, ... Nature methods 15 (11), 962-968, 2018	1468	2018
QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science E Bolyen, JR Rideout, MR Dillon, NA Bokulich, C Abnet, GA Al-Ghalith, ... PeerJ Preprints, 2018	1122	2018
American gut: an open platform for citizen science microbiome research D McDonald, E Hyde, JW Debelius, JT Morton, A Gonzalez, G Ackermann, ... Msystems 3 (3), 10.1128/msystems. 00031-18, 2018	753	2018
Microbial community assembly and metabolic function during mammalian corpse decomposition JL Metcalf, ZZ Xu, S Weiss, S Lax, W Van Treuren, ER Hyde, SJ Song, ... Science 351 (6269), 158-162, 2016	547	2016
Prevalence and evolution of core photosystem II genes in marine cyanobacterial viruses and their hosts MB Sullivan, D Lindell, JA Lee, LR Thompson, JP Bielawski, ... PLOS Biology 4 (8), e234, 2006	540	2006
Phage auxiliary metabolic genes and the redirection of cyanobacterial host carbon metabolism LR Thompson, Q Zeng, L Kelly, KH Huang, AU Singer, JA Stubbe, ... Proceedings of the National Academy of Sciences 108 (39), E757-E764, 2011	528	2011
Genomic analysis of oceanic cyanobacterial myoviruses compared with T4‐like myoviruses from diverse hosts and environments MB Sullivan, KH Huang, JC Ignacio‐Espinoza, AM Berlin, L Kelly, ... Environmental Microbiology 12 (11), 3035-3056, 2010	368	2010
A novel sparse compositional technique reveals microbial perturbations C Martino, JT Morton, CA Marotz, LR Thompson, A Tripathi, R Knight, ... MSystems 4 (1), 10.1128/msystems. 00016-19, 2019	361	2019
Exploring the vast diversity of marine viruses MYA Breitbart, LR Thompson, CA Suttle, MB Sullivan Oceanography 20 (2), 135-139, 2007	336	2007
Evolutionary trends in host physiology outweigh dietary niche in structuring primate gut microbiomes KR Amato, JG Sanders, SJ Song, M Nute, JL Metcalf, LR Thompson, ... The ISME journal 13 (3), 576-587, 2019	294	2019
Choreography of the transcriptome, photophysiology, and cell cycle of a minimal photoautotroph, Prochlorococcus ER Zinser, D Lindell, ZI Johnson, ME Futschik, C Steglich, ML Coleman, ... PLOS ONE 4 (4), e5135, 2009	234	2009
Taxon-specific aerosolization of bacteria and viruses in an experimental ocean-atmosphere mesocosm JM Michaud, LR Thompson, D Kaul, JL Espinoza, RA Richter, ZZ Xu, ... Nature Communications 9 (1), 2017, 2018	148	2018
Physiology and evolution of nitrate acquisition in Prochlorococcus PM Berube, SJ Biller, AG Kent, JW Berta-Thompson, SE Roggensack, ... The ISME Journal 9 (5), 1195, 2015	143	2015
DNA sequencing as a tool to monitor marine ecological status KD Goodwin, LR Thompson, B Duarte, T Kahlke, AR Thompson, ... Frontiers in Marine Science 4, 107, 2017	128	2017
Standardized multi-omics of Earth’s microbiomes reveals microbial and metabolite diversity JP Shaffer, LF Nothias, LR Thompson, JG Sanders, RA Salido, ... Nature Microbiology 7 (12), 2128-2150, 2022	105	2022
EMP 16S Illumina amplicon protocol JG Caporaso, G Ackermann, A Apprill, M Bauer, D Berg-Lyons, J Betley, ...	78	2023

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