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Anton Bankevich
Anton Bankevich
PSU
Verifierad e-postadress på psu.edu - Startsida
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SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing
A Bankevich, S Nurk, D Antipov, AA Gurevich, M Dvorkin, AS Kulikov, ...
Journal of computational biology 19 (5), 455-477, 2012
241652012
Assembling single-cell genomes and mini-metagenomes from chimeric MDA products
S Nurk, A Bankevich, D Antipov, AA Gurevich, A Korobeynikov, A Lapidus, ...
Journal of Computational Biology 20 (10), 714-737, 2013
2081*2013
ExSPAnder: a universal repeat resolver for DNA fragment assembly
AD Prjibelski, I Vasilinetc, A Bankevich, A Gurevich, T Krivosheeva, ...
Bioinformatics 30 (12), i293-i301, 2014
1372014
Comparison of carnivore, omnivore, and herbivore mammalian genomes with a new leopard assembly
S Kim, YS Cho, HM Kim, O Chung, H Kim, S Jho, H Seomun, J Kim, ...
Genome biology 17, 1-12, 2016
1242016
dipSPAdes: assembler for highly polymorphic diploid genomes
Y Safonova, A Bankevich, PA Pevzner
Journal of Computational Biology 22 (6), 528-545, 2015
1052015
Multiplex de Bruijn graphs enable genome assembly from long, high-fidelity reads
A Bankevich, AV Bzikadze, M Kolmogorov, D Antipov, PA Pevzner
Nature biotechnology 40 (7), 1075-1081, 2022
922022
Optimizing sequencing protocols for leaderboard metagenomics by combining long and short reads
JG Sanders, S Nurk, RA Salido, J Minich, ZZ Xu, Q Zhu, C Martino, ...
Genome biology 20, 1-14, 2019
612019
TruSPAdes: barcode assembly of TruSeq synthetic long reads
A Bankevich, PA Pevzner
Nature methods 13 (3), 248-250, 2016
552016
cloudSPAdes: assembly of synthetic long reads using de Bruijn graphs
I Tolstoganov, A Bankevich, Z Chen, PA Pevzner
Bioinformatics 35 (14), i61-i70, 2019
342019
Joint analysis of long and short reads enables accurate estimates of microbiome complexity
A Bankevich, PA Pevzner
Cell systems 7 (2), 192-200. e3, 2018
14*2018
Complete sequencing of ape genomes
DA Yoo, A Rhie, P Hebbar, F Antonacci, GA Logsdon, SJ Solar, D Antipov, ...
BioRxiv, 2024
132024
Bounds of the number of leaves of spanning trees
AV Bankevich, DV Karpov
Journal of Mathematical Sciences 184 (5), 564-572, 2012
122012
mosaicFlye: Resolving long mosaic repeats using long error-prone reads
A Bankevich, P Pevzner
biorxiv, 2020.01. 15.908285, 2020
9*2020
ORFograph: search for novel insecticidal protein genes in genomic and metagenomic assembly graphs
T Dvorkina, A Bankevich, A Sorokin, F Yang, B Adu-Oppong, R Williams, ...
Microbiome 9, 1-14, 2021
62021
Bounds of the number of leaves of spanning trees in graphs without triangles
AV Bankevich
Journal of Mathematical Sciences 184 (5), 557-563, 2012
52012
Assessing assembly errors in immunoglobulin loci: a comprehensive evaluation of long-read genome assemblies across vertebrates
Y Zhu, C Watson, Y Safonova, M Pennell, A Bankevich
bioRxiv, 2024
12024
Detection and Comparative Analysis of Immunoglobulin Genes in Vertebrate Genomes
Y Safonova, A Bankevich, M Pennell, C Watson
Plant and Animal Genome Conference/PAG 31 (January 12-17, 2024), 2024
2024
A Comprehensive Evaluation of Long-Read Whole-Genome Assembly Quality in the Immunoglobulin (IG) Loci across Diverse Vertebrate Species
Y Zhu, C Watson, A Bankevich, M Pennell, Y Safonova
Plant and Animal Genome Conference/PAG 31 (January 12-17, 2024), 0
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Artiklar 1–18