Bioconductor: open software development for computational biology and bioinformatics RC Gentleman, VJ Carey, DM Bates, B Bolstad, M Dettling, S Dudoit, ... Genome biology 5, 1-16, 2004 | 14443 | 2004 |
R: a language for data analysis and graphics R Ihaka, R Gentleman Journal of computational and graphical statistics 5 (3), 299-314, 1996 | 13851 | 1996 |
Circulating microRNAs as stable blood-based markers for cancer detection PS Mitchell, RK Parkin, EM Kroh, BR Fritz, SK Wyman, ... Proceedings of the national academy of sciences 105 (30), 10513-10518, 2008 | 10014 | 2008 |
Software for computing and annotating genomic ranges M Lawrence, W Huber, H Pagès, P Aboyoun, M Carlson, R Gentleman, ... PLoS computational biology 9 (8), e1003118, 2013 | 4150 | 2013 |
Orchestrating high-throughput genomic analysis with Bioconductor W Huber, VJ Carey, R Gentleman, S Anders, M Carlson, BS Carvalho, ... Nature methods 12 (2), 115-121, 2015 | 3705 | 2015 |
Bioinformatics and computational biology solutions using R and Bioconductor R Gentleman, V Carey, W Huber, R Irizarry, S Dudoit Springer Science & Business Media, 2005 | 3642 | 2005 |
gplots: Various R programming tools for plotting data GR Warnes, B Bolker, L Bonebakker, R Gentleman, W Huber, A Liaw, ... R package version 2 (4), 1, 2009 | 3156 | 2009 |
Using GOstats to test gene lists for GO term association S Falcon, R Gentleman Bioinformatics 23 (2), 257-258, 2007 | 2219 | 2007 |
A model-based background adjustment for oligonucleotide expression arrays Z Wu, RA Irizarry, R Gentleman, F Martinez-Murillo, F Spencer Journal of the American statistical Association 99 (468), 909-917, 2004 | 2091 | 2004 |
Comprehensive genomic analysis identifies SOX2 as a frequently amplified gene in small-cell lung cancer CM Rudin, S Durinck, EW Stawiski, JT Poirier, Z Modrusan, DS Shames, ... Nature genetics 44 (10), 1111-1116, 2012 | 1155 | 2012 |
Recurrent R-spondin fusions in colon cancer S Seshagiri, EW Stawiski, S Durinck, Z Modrusan, EE Storm, CB Conboy, ... Nature 488 (7413), 660-664, 2012 | 1124 | 2012 |
arrayQualityMetrics—a bioconductor package for quality assessment of microarray data A Kauffmann, R Gentleman, W Huber Bioinformatics 25 (3), 415-416, 2009 | 1065 | 2009 |
Independent filtering increases detection power for high-throughput experiments R Bourgon, R Gentleman, W Huber Proceedings of the National Academy of Sciences 107 (21), 9546-9551, 2010 | 859 | 2010 |
rtracklayer: an R package for interfacing with genome browsers M Lawrence, R Gentleman, V Carey Bioinformatics 25 (14), 1841, 2009 | 853 | 2009 |
A comprehensive transcriptional portrait of human cancer cell lines C Klijn, S Durinck, EW Stawiski, PM Haverty, Z Jiang, H Liu, J Degenhardt, ... Nature biotechnology 33 (3), 306-312, 2015 | 705 | 2015 |
Biostrings: Efficient manipulation of biological strings H Pagès, P Aboyoun, R Gentleman, S DebRoy R package version 2 (0), 10.18129, 2019 | 695 | 2019 |
The mutation spectrum revealed by paired genome sequences from a lung cancer patient W Lee, Z Jiang, J Liu, PM Haverty, Y Guan, J Stinson, P Yue, Y Zhang, ... Nature 465 (7297), 473-477, 2010 | 640 | 2010 |
ShortRead: a bioconductor package for input, quality assessment and exploration of high-throughput sequence data M Morgan, S Anders, M Lawrence, P Aboyoun, H Pagès, R Gentleman Bioinformatics 25 (19), 2607-2608, 2009 | 618 | 2009 |
flowCore: a Bioconductor package for high throughput flow cytometry F Hahne, N LeMeur, RR Brinkman, B Ellis, P Haaland, D Sarkar, ... BMC bioinformatics 10, 1-8, 2009 | 584 | 2009 |
Genome-wide MyoD binding in skeletal muscle cells: a potential for broad cellular reprogramming Y Cao, Z Yao, D Sarkar, M Lawrence, GJ Sanchez, MH Parker, ... Developmental cell 18 (4), 662-674, 2010 | 551 | 2010 |