| A comparison of automatic cell identification methods for single-cell RNA sequencing data T Abdelaal, L Michielsen, D Cats, D Hoogduin, H Mei, MJT Reinders, ... Genome biology 20, 1-19, 2019 | 549 | 2019 |
| Gene regulatory network analysis and engineering directs development and vascularization of multilineage human liver organoids JJ Velazquez, R LeGraw, F Moghadam, Y Tan, J Kilbourne, JC Maggiore, ... Cell systems 12 (1), 41-55. e11, 2021 | 89 | 2021 |
| Metabolic Age Based on the BBMRI-NL 1H-NMR Metabolomics Repository as Biomarker of Age-related Disease EB Van Den Akker, S Trompet, JJH Barkey Wolf, M Beekman, ... Circulation: Genomic and Precision Medicine 13 (5), 541-547, 2020 | 85 | 2020 |
| Genomic analysis reveals recurrent deletion of JAK‐STAT signaling inhibitors HNRNPK and SOCS1 in mycosis fungoides AN Bastidas Torres, D Cats, H Mei, K Szuhai, R Willemze, MH Vermeer, ... Genes, Chromosomes and Cancer 57 (12), 653-664, 2018 | 73 | 2018 |
| omicsPrint: detection of data linkage errors in multiple omics studies M van Iterson, D Cats, P Hop, BIOS consortium, BT Heijmans Bioinformatics 34 (12), 2142-2143, 2018 | 40 | 2018 |
| LncRNA LITATS1 suppresses TGF‐β‐induced EMT and cancer cell plasticity by potentiating TβRI degradation C Fan, Q Wang, TB Kuipers, D Cats, PV Iyengar, SC Hagenaars, ... The EMBO journal 42 (10), e112806, 2023 | 38 | 2023 |
| Deregulation of JAK2 signaling underlies primary cutaneous CD8+ aggressive epidermotropic cytotoxic T-cell lymphoma ANB Torres, D Cats, JJ Out-Luiting, D Fanoni, H Mei, L Venegoni, ... Haematologica 107 (3), 702, 2021 | 38 | 2021 |
| Improved Sézary cell detection and novel insights into immunophenotypic and molecular heterogeneity in Sézary syndrome S Najidh, CP Tensen, AJ van der Sluijs-Gelling, C Teodosio, D Cats, ... Blood, The Journal of the American Society of Hematology 138 (24), 2539-2554, 2021 | 35 | 2021 |
| Elucidating Epigenetic Regulation by Identifying Functional cis‐Acting Long Noncoding RNAs and Their Targets in Osteoarthritic Articular Cartilage M van Hoolwerff, PI Metselaar, M Tuerlings, HED Suchiman, N Lakenberg, ... Arthritis & Rheumatology 72 (11), 1845-1854, 2020 | 32 | 2020 |
| Whole‐genome analysis uncovers recurrent IKZF1 inactivation and aberrant cell adhesion in blastic plasmacytoid dendritic cell neoplasm AN Bastidas Torres, D Cats, H Mei, D Fanoni, J Gliozzo, L Corti, M Paulli, ... Genes, Chromosomes and Cancer 59 (5), 295-308, 2020 | 25 | 2020 |
| Chuva de Sousa Lopes, SM; et al JJ Velazquez, R LeGraw, F Moghadam, Y Tan, J Kilbourne, JC Maggiore, ... Gene regulatory network analysis and engineering directs development and …, 2021 | 23 | 2021 |
| Omixer: multivariate and reproducible sample randomization to proactively counter batch effects in omics studies L Sinke, D Cats, BT Heijmans Bioinformatics 37 (18), 3051-3052, 2021 | 21 | 2021 |
| DNAmArray: Streamlined workflow for the quality control, normalization, and analysis of Illumina methylation array data L Sinke, M Van Iterson, D Cats, R Slieker, B Heijmans Zenodoa, 2019 | 19 | 2019 |
| Chuva de Sousa Lopes SM et al (2021) Gene regulatory network analysis and engineering directs development and vascularization of multilineage human liver organoids JJ Velazquez, R LeGraw, F Moghadam, Y Tan, J Kilbourne, JC Maggiore, ... Cell Syst 12, 41-55, 0 | 16 | |
| Long non-coding RNA expression profiling of subchondral bone reveals AC005165.1 modifying FRZB expression during osteoarthritis M Tuerlings, M van Hoolwerff, JM van Bokkum, HED Suchiman, ... Rheumatology 61 (7), 3023-3032, 2022 | 12 | 2022 |
| A transcriptome atlas of leg muscles from healthy human volunteers reveals molecular and cellular signatures associated with muscle location T Abbassi-Daloii, S El Abdellaoui, LM Voortman, TTJ Veeger, D Cats, ... elife 12, e80500, 2023 | 11 | 2023 |
| Predicting biological age based on the BBMRI-NL 1H-NMR metabolomics repository EB van den Akker, S Trompet, JJHB Wolf, M Beekman, HED Suchiman, ... BioRxiv, 632919, 2019 | 10 | 2019 |
| CACTUS: integrating clonal architecture with genomic clustering and transcriptome profiling of single tumor cells SD Shafighi, SM Kiełbasa, J Sepúlveda-Yáñez, R Monajemi, D Cats, ... Genome medicine 13, 1-16, 2021 | 9 | 2021 |
| Identification and functional characterization of imbalanced osteoarthritis-associated fibronectin splice variants M van Hoolwerff, M Tuerlings, IJL Wijnen, HED Suchiman, D Cats, H Mei, ... Rheumatology 62 (2), 894-904, 2023 | 8 | 2023 |
| Data harmonization and federated learning for multi-cohort dementia research using the OMOP common data model: A Netherlands consortium of dementia cohorts case study P Mateus, J Moonen, M Beran, E Jaarsma, SM van der Landen, ... Journal of biomedical informatics 155, 104661, 2024 | 7 | 2024 |