| WebGestalt 2019: gene set analysis toolkit with revamped UIs and APIs Y Liao, J Wang, EJ Jaehnig, Z Shi, B Zhang Nucleic acids research 47 (W1), W199-W205, 2019 | 2907 | 2019 |
| Rewiring of genetic networks in response to DNA damage S Bandyopadhyay, M Mehta, D Kuo, MK Sung, R Chuang, EJ Jaehnig, ... Science 330 (6009), 1385-1389, 2010 | 551 | 2010 |
| Proteogenomic and metabolomic characterization of human glioblastoma LB Wang, A Karpova, MA Gritsenko, JE Kyle, S Cao, Y Li, D Rykunov, ... Cancer cell 39 (4), 509-528. e20, 2021 | 512 | 2021 |
| Proteogenomic landscape of breast cancer tumorigenesis and targeted therapy K Krug, EJ Jaehnig, S Satpathy, L Blumenberg, A Karpova, M Anurag, ... Cell 183 (5), 1436-1456. e31, 2020 | 411 | 2020 |
| Proteogenomic characterization of endometrial carcinoma Y Dou, EA Kawaler, DC Zhou, MA Gritsenko, C Huang, L Blumenberg, ... Cell 180 (4), 729-748. e26, 2020 | 384 | 2020 |
| Proteogenomic insights into the biology and treatment of HPV-negative head and neck squamous cell carcinoma C Huang, L Chen, SR Savage, RV Eguez, Y Dou, Y Li, ... Cancer cell 39 (3), 361-379. e16, 2021 | 275 | 2021 |
| A proteogenomic portrait of lung squamous cell carcinoma S Satpathy, K Krug, PMJ Beltran, SR Savage, F Petralia, C Kumar-Sinha, ... Cell 184 (16), 4348-4371. e40, 2021 | 271 | 2021 |
| Microscaled proteogenomic methods for precision oncology S Satpathy, EJ Jaehnig, K Krug, BJ Kim, AB Saltzman, DW Chan, ... Nature Communications 11 (1), 532, 2020 | 117 | 2020 |
| Checkpoint kinases regulate a global network of transcription factors in response to DNA damage EJ Jaehnig, D Kuo, H Hombauer, TG Ideker, RD Kolodner Cell reports 4 (1), 174-188, 2013 | 88 | 2013 |
| Proteogenomic data and resources for pan-cancer analysis Y Li, Y Dou, FDV Leprevost, Y Geffen, AP Calinawan, F Aguet, Y Akiyama, ... Cancer cell 41 (8), 1397-1406, 2023 | 82 | 2023 |
| HRC Is a Direct Transcriptional Target of MEF2 during Cardiac, Skeletal, and Arterial Smooth Muscle Development In Vivo JP Anderson, E Dodou, AB Heidt, SJ De Val, EJ Jaehnig, SB Greene, ... Molecular and cellular biology 24 (9), 3757-3768, 2004 | 79 | 2004 |
| Pan-cancer analysis of post-translational modifications reveals shared patterns of protein regulation Y Geffen, S Anand, Y Akiyama, TM Yaron, Y Song, JL Johnson, ... Cell 186 (18), 3945-3967. e26, 2023 | 71 | 2023 |
| Perspectives on the DNA damage and replication checkpoint responses in Saccharomyces cerevisiae CD Putnam, EJ Jaehnig, RD Kolodner DNA repair 8 (9), 974-982, 2009 | 70 | 2009 |
| Proteogenomic markers of chemotherapy resistance and response in triple-negative breast cancer M Anurag, EJ Jaehnig, K Krug, JT Lei, EJ Bergstrom, BJ Kim, TD Vashist, ... Cancer discovery 12 (11), 2586-2605, 2022 | 64 | 2022 |
| MEF2C regulates outflow tract alignment and transcriptional control of Tdgf1 RM Barnes, IS Harris, EJ Jaehnig, K Sauls, T Sinha, A Rojas, ... Development 143 (5), 774-779, 2016 | 64 | 2016 |
| Pan-cancer proteogenomics connects oncogenic drivers to functional states Y Li, E Porta-Pardo, C Tokheim, MH Bailey, TM Yaron, V Stathias, ... Cell 186 (18), 3921-3944. e25, 2023 | 50 | 2023 |
| Cell-autonomous activation of Hedgehog signaling inhibits brown adipose tissue development LG Nosavanh, DH Yu, EJ Jaehnig, Q Tong, L Shen, MH Chen Proceedings of the National Academy of Sciences 112 (16), 5069-5074, 2015 | 45 | 2015 |
| Identification and characterization of a supraclavicular brown adipose tissue in mice Q Mo, J Salley, T Roshan, LA Baer, FJ May, EJ Jaehnig, AC Lehnig, ... JCI insight 2 (11), e93166, 2017 | 43 | 2017 |
| Integrative multi-omic cancer profiling reveals DNA methylation patterns associated with therapeutic vulnerability and cell-of-origin WW Liang, RJH Lu, RG Jayasinghe, SM Foltz, E Porta-Pardo, Y Geffen, ... Cancer cell 41 (9), 1567-1585. e7, 2023 | 38 | 2023 |
| Pan-cancer proteogenomics characterization of tumor immunity F Petralia, W Ma, TM Yaron, FP Caruso, N Tignor, JM Wang, ... Cell 187 (5), 1255-1277. e27, 2024 | 34 | 2024 |
