Plasma DNA end-motif profiling as a fragmentomic marker in cancer, pregnancy, and transplantation P Jiang, K Sun, W Peng, SH Cheng, M Ni, PC Yeung, MMS Heung, T Xie, ... Cancer Discovery 10 (5), 664-673, 2020 | 244 | 2020 |
Dnase1l3 deletion causes aberrations in length and end-motif frequencies in plasma DNA L Serpas, RWY Chan, P Jiang, M Ni, K Sun, A Rashidfarrokhi, C Soni, ... Proceedings of the National Academy of Sciences 116 (2), 641-649, 2019 | 181 | 2019 |
Sequencing-based counting and size profiling of plasma Epstein–Barr virus DNA enhance population screening of nasopharyngeal carcinoma WKJ Lam, P Jiang, KCA Chan, SH Cheng, H Zhang, W Peng, OYO Tse, ... Proceedings of the National Academy of Sciences 115 (22), E5115-E5124, 2018 | 144 | 2018 |
Contributions of Zea mays subspecies mexicana haplotypes to modern maize N Yang, XW Xu, RR Wang, WL Peng, L Cai, JM Song, W Li, X Luo, L Niu, ... Nature communications 8 (1), 1874, 2017 | 130 | 2017 |
Genome-wide detection of cytosine methylation by single molecule real-time sequencing OYO Tse, P Jiang, SH Cheng, W Peng, H Shang, J Wong, SL Chan, ... Proceedings of the National Academy of Sciences 118 (5), e2019768118, 2021 | 109 | 2021 |
Detection and characterization of jagged ends of double-stranded DNA in plasma P Jiang, T Xie, SC Ding, Z Zhou, SH Cheng, RWY Chan, WS Lee, W Peng, ... Genome research 30 (8), 1144-1153, 2020 | 87 | 2020 |
Functional analysis of long intergenic non-coding RNAs in phosphate-starved rice using competing endogenous RNA network XW Xu, XH Zhou, RR Wang, WL Peng, Y An, LL Chen Scientific reports 6 (1), 20715, 2016 | 79 | 2016 |
Single-molecule sequencing reveals a large population of long cell-free DNA molecules in maternal plasma SCY Yu, P Jiang, W Peng, SH Cheng, YTT Cheung, OYO Tse, H Shang, ... Proceedings of the National Academy of Sciences 118 (50), e2114937118, 2021 | 72 | 2021 |
Methylation analysis of plasma DNA informs etiologies of Epstein-Barr virus-associated diseases WKJ Lam, P Jiang, KCA Chan, W Peng, H Shang, MMS Heung, ... Nature communications 10 (1), 3256, 2019 | 68 | 2019 |
Epigenetic analysis of cell-free DNA by fragmentomic profiling Q Zhou, G Kang, P Jiang, R Qiao, WKJ Lam, SCY Yu, MJL Ma, L Ji, ... Proceedings of the National Academy of Sciences 119 (44), e2209852119, 2022 | 61 | 2022 |
Plasma DNA profile associated with DNASE1L3 gene mutations: clinical observations, relationships to nuclease substrate preference, and in vivo correction RWY Chan, L Serpas, M Ni, S Volpi, LT Hiraki, LS Tam, A Rashidfarrokhi, ... The American Journal of Human Genetics 107 (5), 882-894, 2020 | 58 | 2020 |
Single-molecule sequencing enables long cell-free DNA detection and direct methylation analysis for cancer patients LYL Choy, W Peng, P Jiang, SH Cheng, SCY Yu, H Shang, OY Olivia Tse, ... Clinical Chemistry 68 (9), 1151-1163, 2022 | 48 | 2022 |
Topologic analysis of plasma mitochondrial DNA reveals the coexistence of both linear and circular molecules MJL Ma, H Zhang, P Jiang, STK Sin, WKJ Lam, SH Cheng, WS Lee, ... Clinical chemistry 65 (9), 1161-1170, 2019 | 39 | 2019 |
Fragmentation landscape of cell-free DNA revealed by deconvolutional analysis of end motifs Z Zhou, MJL Ma, RWY Chan, WKJ Lam, W Peng, W Gai, X Hu, SC Ding, ... Proceedings of the National Academy of Sciences 120 (17), e2220982120, 2023 | 37 | 2023 |
Comparison of single molecule, real-time sequencing and nanopore sequencing for analysis of the size, end-motif, and tissue-of-origin of long cell-free DNA in plasma SCY Yu, J Deng, R Qiao, SH Cheng, W Peng, SL Lau, LYL Choy, ... Clinical Chemistry 69 (2), 168-179, 2023 | 37 | 2023 |
Jagged ends of urinary cell-free DNA: characterization and feasibility assessment in bladder cancer detection Z Zhou, SH Cheng, SC Ding, MMS Heung, T Xie, THT Cheng, WKJ Lam, ... Clinical Chemistry 67 (4), 621-630, 2021 | 35 | 2021 |
Regulation of plant height in rice by the Polycomb group genes OsEMF2b, OsFIE2 and OsCLF J Zhong, Z Peng, Q Peng, Q Cai, W Peng, M Chen, J Yao Plant Science 267, 157-167, 2018 | 28 | 2018 |
Comparative genomic and functional analyses: unearthing the diversity and specificity of nematicidal factors in Pseudomonas putida strain 1A00316 J Guo, X Jing, WL Peng, Q Nie, Y Zhai, Z Shao, L Zheng, M Cai, G Li, ... Scientific reports 6 (1), 29211, 2016 | 27 | 2016 |
Jagged ends on multinucleosomal cell-free DNA serve as a biomarker for nuclease activity and systemic lupus erythematosus SC Ding, RWY Chan, W Peng, L Huang, Z Zhou, X Hu, S Volpi, LT Hiraki, ... Clinical Chemistry 68 (7), 917-926, 2022 | 13 | 2022 |
Genomic origin, fragmentomics, and transcriptional properties of long cell-free DNA molecules in human plasma H Che, P Jiang, LYL Choy, SH Cheng, W Peng, RWY Chan, J Liu, Q Zhou, ... Genome Research 34 (2), 189-200, 2024 | 5 | 2024 |