| SALMON: survival analysis learning with multi-omics neural networks on breast cancer Z Huang, X Zhan, S Xiang, TS Johnson, B Helm, CY Yu, J Zhang, ... Frontiers in genetics 10, 166, 2019 | 229 | 2019 |
| The trans-omics landscape of COVID-19 P Wu, D Chen, W Ding, P Wu, H Hou, Y Bai, Y Zhou, K Li, S Xiang, P Liu, ... Nature Communications 12 (1), 4543, 2021 | 108 | 2021 |
| Deep learning-based cancer survival prognosis from RNA-seq data: approaches and evaluations Z Huang, TS Johnson, Z Han, B Helm, S Cao, C Zhang, P Salama, ... BMC medical genomics 13, 1-12, 2020 | 93 | 2020 |
| RNAMethPre: A Web Server for the Prediction and Query of mRNA m6A Sites S Xiang, K Liu, Z Yan, Y Zhang, Z Sun PloS one 11 (10), e0162707, 2016 | 57 | 2016 |
| AthMethPre: A web server for the prediction and query of mRNA m 6 A sites in Arabidopsis thaliana S Xiang, Z Yan, K Liu, Y Zhang, Z Sun Molecular BioSystems 12 (11), 3333-3337, 2016 | 55 | 2016 |
| A1 reactive astrocytes and a loss of TREM2 are associated with an early stage of pathology in a mouse model of cerebral amyloid angiopathy X Taylor, P Cisternas, Y You, Y You, S Xiang, Y Marambio, J Zhang, ... Journal of neuroinflammation 17, 1-18, 2020 | 51 | 2020 |
| Condition-specific gene co-expression network mining identifies key pathways and regulators in the brain tissue of Alzheimer’s disease patients S Xiang, Z Huang, T Wang, Z Han, CY Yu, D Ni, K Huang, J Zhang BMC medical genomics 11, 39-51, 2018 | 29 | 2018 |
| Hyper-graph based sparse canonical correlation analysis for the diagnosis of Alzheimer’s disease from multi-dimensional genomic data W Shao, S Xiang, Z Zhang, K Huang, J Zhang Methods 189, 86-94, 2021 | 23 | 2021 |
| Combinatorial analyses reveal cellular composition changes have different impacts on transcriptomic changes of cell type specific genes in Alzheimer’s Disease TS Johnson, S Xiang, T Dong, Z Huang, M Cheng, T Wang, K Yang, D Ni, ... Scientific Reports 11 (1), 353, 2021 | 21 | 2021 |
| Spatial cell type composition in normal and Alzheimers human brains is revealed using integrated mouse and human single cell RNA sequencing TS Johnson, S Xiang, BR Helm, ZB Abrams, P Neidecker, R Machiraju, ... Scientific reports 10 (1), 18014, 2020 | 20 | 2020 |
| TSUNAMI: translational bioinformatics tool suite for network analysis and mining Z Huang, Z Han, T Wang, W Shao, S Xiang, P Salama, M Rizkalla, ... Genomics, proteomics & bioinformatics 19 (6), 1023-1031, 2021 | 16 | 2021 |
| Vascular amyloid accumulation alters the gabaergic synapse and induces hyperactivity in a model of cerebral amyloid angiopathy P Cisternas, X Taylor, A Perkins, O Maldonado, E Allman, R Cordova, ... Aging Cell 19 (10), e13233, 2020 | 10 | 2020 |
| Gene co-expression network and copy number variation analyses identify transcription factors associated with multiple myeloma progression CY Yu, S Xiang, Z Huang, TS Johnson, X Zhan, Z Han, M Abu Zaid, ... Frontiers in genetics 10, 468, 2019 | 8 | 2019 |
| SALMON: survival analysis learning with multi-omics neural networks on breast cancer. Front Genet 10: 166 Z Huang, X Zhan, S Xiang, TS Johnson, B Helm, CY Yu, J Zhang, ... | 6 | 2019 |
| txCoords: a novel web application for transcriptomic peak re-mapping Z Yan, K Liu, S Xiang, Z Sun IEEE/ACM Transactions on Computational Biology and Bioinformatics 14 (3 …, 2016 | 4 | 2016 |
| Modeling Path Importance for Effective Alzheimer’s Disease Drug Repurposing S Xiang, PJ Lawrence, B Peng, CW Chiang, D Kim, L Shen, X Ning Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing 29, 306, 2024 | 1 | 2024 |
| Mining of differentially co‐expressed gene modules reveals perturbed functional network and key regulators in Alzheimer's disease brains: Developing topics S Xiang, D Ni, K Huang, J Zhang Alzheimer's & Dementia 16, e047095, 2020 | 1 | 2020 |
| A Novel Method for Identifying Length Variations of Short Tandem Repeats Based on Next Generation Sequencing and Its Application in Human Genetic Disease Research Z YAN, Y WANG, K LIU, S XIANG, Z SUN Progress in Biochemistry and Biophysics, 2016 | 1 | 2016 |
| Modeling Path Importance for Effective Alzheimer’s Disease Drug Repurposing (Supplementary Materials) S Xiang, PJ Lawrence, B Peng, CW Chiang, D Kim, L Shen, X Ning | | 2023 |
| Combinatorial analyses reveal that cellular composition changes have different impact on transcriptomic changes of cell type specific genes in Alzheimer’s Disease brains S Xiang, T Johnson, T Dong, Z Huang, M Cheng, T Wang, K Yang, D Ni, ... | | 2020 |
