| RabbitTClust: enabling fast clustering analysis of millions of bacteria genomes with MinHash sketches X Xu, Z Yin, L Yan, H Zhang, B Xu, Y Wei, B Niu, B Schmidt, W Liu Genome Biology 24 (1), 121, 2023 | 6 | 2023 |
| Kilometer-level coupled modeling using 40 million cores: an eight-year journey of model development X Duan, Y Li, Z Liu, B Yang, J Zheng, H Fu, S Zhang, S Xu, Y Gao, W Xue, ... arXiv preprint arXiv:2404.10253, 2024 | 2 | 2024 |
| RabbitQCPlus 2.0: More efficient and versatile quality control for sequencing data L Yan, Z Yin, H Zhang, Z Zhao, M Wang, A Müller, F Kallenborn, ... Methods 216, 39-50, 2023 | 2 | 2023 |
| RabbitQCPlus: more efficient quality control for sequencing data L Yan, Z Yin, H Zhang, Z Zhao, M Wang, A Müller, R Kobus, Y Wei, B Niu, ... 2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2022 | 2 | 2022 |
| O2ath: an OpenMP offloading toolkit for the sunway heterogeneous manycore platform H Lin, L Yan, Q Chang, H Lu, C Li, Q He, Z Song, X Duan, Z Yin, Y Li, ... CCF Transactions on High Performance Computing 6 (3), 274-286, 2024 | 1 | 2024 |
| RabbitKSSD: accelerating genome distance estimation on modern multi-core architectures X Xu, Z Yin, L Yan, H Yi, H Wang, B Schmidt, W Liu Bioinformatics 39 (11), btad695, 2023 | 1 | 2023 |
| SWQC: Efficient sequencing data quality control on the next-generation sunway platform L Yan, Z Yin, T Zhang, F Zhu, X Duan, B Schmidt, W Liu Future Generation Computer Systems 164, 107577, 2025 | | 2025 |
| RabbitTrim: Highly Optimized Trimming of Illumina Sequencing Data on Multi-core Platforms M Wang, Z Yin, L Yan, Y Yang, F Zhu, X Duan, X Li, B Schmidt, W Liu International Symposium on Bioinformatics Research and Applications, 26-37, 2024 | | 2024 |
| RabbitSAlign: Accelerating Short-Read Alignment for CPU-GPU Heterogeneous Platforms L Yan, Z Yin, J Li, Y Yang, T Zhang, F Zhu, X Duan, B Schmidt, W Liu International Symposium on Bioinformatics Research and Applications, 83-94, 2024 | | 2024 |
| Leveraging Data Density and Sparsity for Efficient SVM Training on GPUs B Xu, Z Wen, L Yan, Z Zhao, Z Yin, W Liu, B He 2023 IEEE International Conference on Data Mining (ICDM), 698-707, 2023 | | 2023 |
