| PPLine: an automated pipeline for SNP, SAP, and splice variant detection in the context of proteogenomics GS Krasnov, AA Dmitriev, AV Kudryavtseva, AV Shargunov, DS Karpov, ... Journal of proteome research 14 (9), 3729-3737, 2015 | 86 | 2015 |
| Human aqueous humor proteome in cataract, glaucoma, and pseudoexfoliation syndrome AA Kliuchnikova, NI Samokhina, IY Ilina, DS Karpov, MA Pyatnitskiy, ... Proteomics 16 (13), 1938-1946, 2016 | 69 | 2016 |
| Exome-driven characterization of the cancer cell lines at the proteome level: the NCI-60 case study MA Karpova, DS Karpov, MV Ivanov, MA Pyatnitskiy, AL Chernobrovkin, ... Journal of proteome research 13 (12), 5551-5560, 2014 | 41 | 2014 |
| Proteasome inhibition enhances resistance to DNA damage via upregulation of Rpn4-dependent DNA repair genes DS Karpov, DS Spasskaya, VV Tutyaeva, AS Mironov, VL Karpov FEBS letters 587 (18), 3108-3114, 2013 | 39 | 2013 |
| Expression of long non-coding RNA LINC00973 is consistently increased upon treatment of colon cancer cells with different chemotherapeutic drugs OL Zinovieva, EN Grineva, MM Prokofjeva, DS Karpov, AO Zheltukhin, ... Biochimie 151, 67-72, 2018 | 36 | 2018 |
| Exome‐based proteogenomics of HEK‐293 human cell line: Coding genomic variants identified at the level of shotgun proteome AA Lobas, DS Karpov, AT Kopylov, EM Solovyeva, MV Ivanov, IY Ilina, ... Proteomics 16 (14), 1980-1991, 2016 | 33 | 2016 |
| Methionine to isothreonine conversion as a source of false discovery identifications of genetically encoded variants in proteogenomics AL Chernobrovkin, AT Kopylov, VG Zgoda, AA Moysa, MA Pyatnitskiy, ... Journal of Proteomics 120, 169-178, 2015 | 32 | 2015 |
| A plasmid-expressed CRISPR/Cas9 system suppresses replication of HSV type I in a vero cell culture DS Karpov, VL Karpov, RR Klimova, NA Demidova, AA Kushch Molecular Biology 53 (1), 70-78, 2019 | 23 | 2019 |
| Bringing down cancer aircraft: searching for essential hypomutated proteins in skin melanoma M Pyatnitskiy, D Karpov, E Poverennaya, A Lisitsa, S Moshkovskii PLoS One 10 (11), e0142819, 2015 | 23 | 2015 |
| Rpn4p is a positive and negative transcriptional regulator of the ubiquitin-proteasome system DS Karpov, SA Osipov, OV Preobrazhenskaya, VL Karpov Molecular Biology 42, 456-462, 2008 | 23 | 2008 |
| Proteogenomics of adenosine-to-inosine RNA editing in the fruit fly KG Kuznetsova, AA Kliuchnikova, IU Ilina, AL Chernobrovkin, ... Journal of Proteome Research 17 (11), 3889-3903, 2018 | 22 | 2018 |
| Mapping of yeast Rpn4p transactivation domains KS Dmitry, VV Tutyaeva, VL Karpov FEBS letters 582 (23-24), 3459-3464, 2008 | 22 | 2008 |
| Adenosine‐to‐Inosine RNA Editing in Mouse and Human Brain Proteomes LI Levitsky, AA Kliuchnikova, KG Kuznetsova, DS Karpov, MV Ivanov, ... Proteomics 19 (23), 1900195, 2019 | 21 | 2019 |
| CRISPR/Cas9-Mediated Genome Engineering Reveals the Contribution of the 26S Proteasome to the Extremophilic Nature of the Yeast Debaryomyces hansenii DS Spasskaya, MI Kotlov, DS Lekanov, VV Tutyaeva, AV Snezhkina, ... ACS Synthetic Biology 10 (2), 297-308, 2021 | 19 | 2021 |
| Age-dependent expression profiles of two adaptogenic systems and thermotolerance in Drosophila melanogaster V Shilova, O Zatsepina, A Zakluta, D Karpov, L Chuvakova, D Garbuz, ... Cell Stress and Chaperones 25 (2), 305-315, 2020 | 19 | 2020 |
| Proteogenomics of malignant melanoma cell lines: the effect of stringency of exome data filtering on variant peptide identification in shotgun proteomics AA Lobas, MA Pyatnitskiy, AL Chernobrovkin, IY Ilina, DS Karpov, ... Journal of proteome research 17 (5), 1801-1811, 2018 | 19 | 2018 |
| Rpn4 and proteasome-mediated yeast resistance to ethanol includes regulation of autophagy JA Bubis, DS Spasskaya, VA Gorshkov, F Kjeldsen, AM Kofanova, ... Applied microbiology and biotechnology 104, 4027-4041, 2020 | 18 | 2020 |
| Cellular models in schizophrenia research DA Abashkin, AO Kurishev, DS Karpov, VE Golimbet International journal of molecular sciences 22 (16), 8518, 2021 | 17 | 2021 |
| Comparison of false discovery rate control strategies for variant peptide identifications in shotgun proteogenomics MV Ivanov, AA Lobas, DS Karpov, SA Moshkovskii, MV Gorshkov Journal of Proteome Research 16 (5), 1936-1943, 2017 | 17 | 2017 |
| Treatment of cancer cells with chemotherapeutic drugs results in profound changes in expression of genes encoding aldehyde-metabolizing enzymes OL Zinovieva, EN Grineva, GS Krasnov, DS Karpov, AO Zheltukhin, ... Journal of Cancer 10 (18), 4256, 2019 | 16 | 2019 |
Vadim KarpovEngelhardt Institute of Molecular Biologyยืนยันอีเมลแล้วที่ eimb.ru