| Engineering bacterial thiosulfate and tetrathionate sensors for detecting gut inflammation KNM Daeffler, JD Galley, RU Sheth, LC Ortiz‐Velez, CO Bibb, NF Shroyer, ... Molecular systems biology 13 (4), 923, 2017 | 301 | 2017 |
| Manipulating bacterial communities by in situ microbiome engineering RU Sheth, V Cabral, SP Chen, HH Wang Trends in Genetics 32 (4), 189-200, 2016 | 290 | 2016 |
| Multiplex recording of cellular events over time on CRISPR biological tape RU Sheth, SS Yim, FL Wu, HH Wang Science 358 (6369), 1457-1461, 2017 | 202 | 2017 |
| Refactoring and Optimization of Light-Switchable Escherichia coli Two-Component Systems SR Schmidl, RU Sheth, A Wu, JJ Tabor ACS synthetic biology 3 (11), 820-831, 2014 | 198 | 2014 |
| DNA-based memory devices for recording cellular events RU Sheth, HH Wang Nature Reviews Genetics 19 (11), 718-732, 2018 | 169 | 2018 |
| Spatial metagenomic characterization of microbial biogeography in the gut RU Sheth, M Li, W Jiang, PA Sims, KW Leong, HH Wang Nature biotechnology 37 (8), 877-883, 2019 | 139 | 2019 |
| High-throughput microbial culturomics using automation and machine learning Y Huang, RU Sheth, S Zhao, LA Cohen, K Dabaghi, T Moody, Y Sun, ... Nature Biotechnology 41 (10), 1424-1433, 2023 | 122 | 2023 |
| Rewiring bacterial two-component systems by modular DNA-binding domain swapping SR Schmidl, F Ekness, K Sofjan, KNM Daeffler, KR Brink, BP Landry, ... Nature Chemical Biology 15 (7), 690-698, 2019 | 103 | 2019 |
| Robust direct digital-to-biological data storage in living cells SS Yim, RM McBee, AM Song, Y Huang, RU Sheth, HH Wang Nature Chemical Biology 17 (3), 246-253, 2021 | 88 | 2021 |
| Recording mobile DNA in the gut microbiota using an Escherichia coli CRISPR-Cas spacer acquisition platform C Munck, RU Sheth, DE Freedberg, HH Wang Nature communications 11 (1), 95, 2020 | 78 | 2020 |
| Quantifying spatiotemporal variability and noise in absolute microbiota abundances using replicate sampling BW Ji, RU Sheth, PD Dixit, Y Huang, A Kaufman, HH Wang, D Vitkup Nature Methods 16 (8), 731-736, 2019 | 75 | 2019 |
| Macroecological dynamics of gut microbiota BW Ji, RU Sheth, PD Dixit, K Tchourine, D Vitkup Nature microbiology 5 (5), 768-775, 2020 | 71 | 2020 |
| Scalable and cost-effective ribonuclease-based rRNA depletion for transcriptomics Y Huang, RU Sheth, A Kaufman, HH Wang Nucleic acids research 48 (4), e20-e20, 2020 | 48 | 2020 |
| The effect of short-course antibiotics on the resistance profile of colonizing gut bacteria in the ICU: a prospective cohort study C Munck, RU Sheth, E Cuaresma, J Weidler, SL Stump, P Zachariah, ... Critical Care 24, 1-10, 2020 | 12 | 2020 |
| High-throughput transcriptomics of 409 bacteria–drug pairs reveals drivers of gut microbiota perturbation D Ricaurte, Y Huang, RU Sheth, DR Gelsinger, A Kaufman, HH Wang Nature microbiology 9 (2), 561-575, 2024 | 10 | 2024 |
| Real-time capture of horizontal gene transfers from gut microbiota by engineered CRISPR-Cas acquisition C Munck, RU Sheth, DE Freedberg, HH Wang bioRxiv, 492751, 2018 | 6 | 2018 |
| Quantification of human gut microbiota variability using replicate sampling and spike-in sequencing BW Ji, RU Sheth, PD Dixit, HH Wang, D Vitkup bioRxiv, 310649, 2018 | 2 | 2018 |
| Spatiotemporal dynamics during niche remodeling by super-colonizing microbiota in the mammalian gut G Urtecho, T Moody, Y Huang, RU Sheth, M Richardson, HC Descamps, ... Cell Systems 15 (11), 1002-1017. e4, 2024 | 1 | 2024 |
| New Tools for Understanding and Engineering Complex Microbial Communities RU Sheth Columbia University, 2019 | 1 | 2019 |
| Macroecological dynamics of gut microbiota BW Ji, RU Sheth, PD Dixit, K Tchourine, D Vitkup bioRxiv, 370676, 2018 | 1 | 2018 |