| Protein cutoff scanning: A comparative analysis of cutoff dependent and cutoff free methods for prospecting contacts in proteins CH da Silveira, DEV Pires, RC Minardi, C Ribeiro, CJM Veloso, ... Proteins: Structure, Function, and Bioinformatics 74 (3), 727-743, 2009 | 110 | 2009 |
| Cutoff Scanning Matrix (CSM): structural classification and function prediction by protein inter-residue distance patterns DEV Pires, RC de Melo-Minardi, MA dos Santos, CH da Silveira, ... BMC genomics 12, 1-11, 2011 | 95 | 2011 |
| aCSM: noise-free graph-based signatures to large-scale receptor-based ligand prediction DEV Pires, RC de Melo-Minardi, CH da Silveira, FF Campos, W Meira Jr Bioinformatics 29 (7), 855-861, 2013 | 69 | 2013 |
| Finding protein-protein interaction patterns by contact map matching. RC Melo, C Ribeiro, CS Murray, CJM Veloso, CH da Silveira, G Neshich, ... Genetics and Molecular Research, v. 6, n. 4, p. 946-963, 2007., 2007 | 31 | 2007 |
| Molecular dynamics gives new insights into the glucose tolerance and inhibition mechanisms on β-glucosidases LSC Costa, DCB Mariano, REO Rocha, J Kraml, CH Silveira, KR Liedl, ... Molecules 24 (18), 3215, 2019 | 30 | 2019 |
| EasyVS: a user-friendly web-based tool for molecule library selection and structure-based virtual screening DEV Pires, WNP Veloso, YC Myung, CHM Rodrigues, M Silk, ... Bioinformatics 36 (14), 4200-4202, 2020 | 29 | 2020 |
| Hydropace: understanding and predicting cross-inhibition in serine proteases through hydrophobic patch centroids VM Gonçalves-Almeida, DEV Pires, RC de Melo-Minardi, CH da Silveira, ... Bioinformatics 28 (3), 342-349, 2012 | 22 | 2012 |
| A contact map matching approach to protein structure similarity analysis RC de Melo, CE Lopes, FA Fernandes Jr, CH da Silveira, MM Santoro, ... Genet Mol Res 5 (2), 284-308, 2006 | 19 | 2006 |
| A higher flexibility at the SARS-CoV-2 main protease active site compared to SARS-CoV and its potentialities for new inhibitor virtual screening targeting multi-conformers REO Rocha, EJF Chaves, PHC Fischer, LSC Costa, IB Grillo, ... Journal of Biomolecular Structure and Dynamics 40 (19), 9214-9234, 2022 | 16 | 2022 |
| On the characterization of energy networks of proteins CJ Veloso, CH Silveira, RC Melo, C Ribeiro, JC Lopes, MM Santoro, ... Genet. Mol. Res 6 (4), 799-820, 2007 | 13 | 2007 |
| Enzymap: Exploiting protein annotation for modeling and predicting ec number changes in uniprot/swiss-prot SA Silveira, RC de Melo-Minardi, CH da Silveira, MM Santoro, W Meira Jr PloS one 9 (2), e89162, 2014 | 12 | 2014 |
| Elucidating the molecular mechanisms of essential oils' insecticidal action using a novel cheminformatics protocol EJA Corrêa, FC Carvalho, JA de Castro Oliveira, SKV Bertolucci, ... Scientific Reports 13 (1), 4598, 2023 | 11 | 2023 |
| visGReMLIN: graph mining-based detection and visualization of conserved motifs at 3D protein-ligand interface at the atomic level VS Ribeiro, CA Santana, AV Fassio, FR Cerqueira, CH da Silveira, ... BMC bioinformatics 21, 1-12, 2020 | 11 | 2020 |
| ADVISe: Visualizing the dynamics of enzyme annotations in UniProt/Swiss-Prot SA Silveira, AO Rodrigues, RC de Melo-Minardi, CH da Silveira, W Meira 2012 IEEE Symposium on Biological Data Visualization (BioVis), 49-56, 2012 | 11 | 2012 |
| Profile of Myracrodruon urundeuva Volatile Compounds Ease of Extraction and Biodegradability and In Silico Evaluation of Their Interactions with COX-1 and iNOS YG Figueiredo, EA Corrêa, AH de Oliveira Junior, ACC Mazzinghy, ... Molecules 27 (5), 1633, 2022 | 10 | 2022 |
| PDBest: A user–friendly platform for manipulating and enhancing protein structures WRS Goncalves, VM Goncalves-Almeida, AL Arruda, W Meira Jr, ... Bioinformatics 31 (17), 2894-2896, 2015 | 10 | 2015 |
| Analysis of binding properties and specificity through identification of the interface forming residues (IFR) for serine proteases in silico docked to different inhibitors C Ribeiro, RC Togawa, IAP Neshich, I Mazoni, AL Mancini, RCM Minardi, ... BMC Structural Biology 10, 1-16, 2010 | 10 | 2010 |
| Psychosocial monitoring: Understanding irrational people A Mata, D Antunes, RG De Carvalho, JM Palma-Oliveira, J Lino, S Luís, ... Guedes Soares & Zio (Eds.) Safety and Reliability for Managing Risk, 1327-1332, 2006 | 8 | 2006 |
| Gremlin: A graph mining strategy to infer protein-ligand interaction patterns CA Santana, FR Cerqueira, CH Da Silveira, AV Fassio, ... 2016 IEEE 16th International Conference on Bioinformatics and Bioengineering …, 2016 | 7 | 2016 |
| Thermostabilizing mechanisms of canonical single amino acid substitutions at a GH1 β‐glucosidase probed by multiple MD and computational approaches REO Rocha, DCB Mariano, TS Almeida, LS CorrêaCosta, PHC Fischer, ... Proteins: Structure, Function, and Bioinformatics 91 (2), 218-236, 2023 | 5 | 2023 |
Raquel Cardoso de Melo-MinardiUniversidade Federal de Minas Geraisยืนยันอีเมลแล้วที่ dcc.ufmg.br
