| PathoFact: a pipeline for the prediction of virulence factors and antimicrobial resistance genes in metagenomic data L De Nies, S Lopes, SB Busi, V Galata, A Heintz-Buschart, CC Laczny, ... Microbiome 9, 1-14, 2021 | 133 | 2021 |
| Reservoirs of antimicrobial resistance in the context of One Health M Despotovic, L de Nies, SB Busi, P Wilmes Current opinion in microbiology 73, 102291, 2023 | 58 | 2023 |
| Antibiotic-induced collateral damage to the microbiota and associated infections L de Nies, CM Kobras, M Stracy Nature Reviews Microbiology 21 (12), 789-804, 2023 | 52 | 2023 |
| Persistence of birth mode-dependent effects on gut microbiome composition, immune system stimulation and antimicrobial resistance during the first year of life SB Busi, L de Nies, J Habier, L Wampach, JV Fritz, A Heintz-Buschart, ... ISME communications 1 (1), 8, 2021 | 47 | 2021 |
| Genomic and metabolic adaptations of biofilms to ecological windows of opportunity in glacier-fed streams SB Busi, M Bourquin, S Fodelianakis, G Michoud, TJ Kohler, H Peter, ... Nature communications 13 (1), 2168, 2022 | 42 | 2022 |
| Evolution of the murine gut resistome following broad-spectrum antibiotic treatment L de Nies, SB Busi, M Tsenkova, R Halder, E Letellier, P Wilmes Nature Communications 13 (1), 2296, 2022 | 37 | 2022 |
| Altered infective competence of the human gut microbiome in COVID-19 L de Nies, V Galata, C Martin-Gallausiaux, M Despotovic, SB Busi, ... Microbiome 11 (1), 46, 2023 | 21 | 2023 |
| PathoFact: a pipeline for the prediction of virulence factors and antimicrobial resistance genes in metagenomic data. Microbiome 9: 49 L De Nies, S Lopes, SB Busi, V Galata, A Heintz-Buschart, CC Laczny, ... | 20 | 2021 |
| Mobilome-driven segregation of the resistome in biological wastewater treatment L de Nies, SB Busi, BJ Kunath, P May, P Wilmes Elife 11, e81196, 2022 | 17 | 2022 |
| Challenges, strategies, and perspectives for reference-independent longitudinal multi-omic microbiome studies S Martínez Arbas, SB Busi, P Queirós, L de Nies, M Herold, P May, ... Frontiers in Genetics 12, 666244, 2021 | 15 | 2021 |
| Glacier-fed stream biofilms harbor diverse resistomes and biosynthetic gene clusters SB Busi, L de Nies, P Pramateftaki, M Bourquin, TJ Kohler, L Ezzat, ... Microbiology spectrum 11 (1), e04069-22, 2023 | 9 | 2023 |
| Functional meta-omics provide critical insights into long-and short-read assemblies V Galata, SB Busi, BJ Kunath, L de Nies, M Calusinska, R Halder, P May, ... Briefings in Bioinformatics 22 (6), bbab330, 2021 | 7 | 2021 |
| Persistence of birth mode-dependent effects on gut microbiome composition, immune system stimulation and antimicrobial resistance during the first year of life. ISME Commun … SB Busi, L de Nies, J Habier, L Wampach, JV Fritz, A Heintz-Buschart, ... World Health Organization. Complementary Feeding: Family foods for breastfed …, 2000 | 5 | 2000 |
| Synergistic effect of short-and long-read sequencing on functional meta-omics V Galata, SB Busi, BJ Kunath, L de Nies, M Calusinska, R Halder, P May, ... bioRxiv, 2021.04. 22.440869, 2021 | 1 | 2021 |
| Fecal IgE Analyses Reveal a Role for Stratifying Peanut-Allergic Patients R Czolk, F Codreanu-Morel, L de Nies, SB Busi, R Halder, O Hunewald, ... Journal of investigational allergology & clinical immunology, 0, 2024 | | 2024 |
| The gut microbiome-linked long chain fatty acid stearate suppresses colorectal cancer M Tsenkova, M Brauer, V Pozdeev, M Kasakin, SB Busi, M Schmoetten, ... bioRxiv, 2023.12. 07.570549, 2023 | | 2023 |
| The response to ketogenic diet in colorectal cancer is mediated by lasting functional alterations of the gut microbiome M Tsenkova, M Brauer, M Kasakin, SB Busi, M Schmoetten, A Gaigneaux, ... | | 2023 |
| Microbiome reservoirs of antimicrobial resistance L de Nies Unilu-University of Luxembourg, Esch-sur-Alzette, Luxembourg, 2022 | | 2022 |
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