| Spin-orbit engineering in transition metal dichalcogenide alloy monolayers G Wang, C Robert, A Suslu, B Chen, S Yang, S Alamdari, IC Gerber, ... Nature communications 6 (1), 10110, 2015 | 252 | 2015 |
| Protein structure generation via folding diffusion KE Wu, KK Yang, R van den Berg, S Alamdari, JY Zou, AX Lu, AP Amini Nature communications 15 (1), 1059, 2024 | 170 | 2024 |
| Protein generation with evolutionary diffusion: sequence is all you need S Alamdari, N Thakkar, R van den Berg, N Tenenholtz, B Strome, ... BioRxiv, 2023.09. 11.556673, 2023 | 99* | 2023 |
| Ice-nucleating proteins are activated by low temperatures to control the structure of interfacial water SJ Roeters, TW Golbek, M Bregnhøj, T Drace, S Alamdari, W Roseboom, ... Nature Communications 17 (27), 29, 2021 | 71 | 2021 |
| Orientation and conformation of proteins at the air–water interface determined from integrative molecular dynamics simulations and sum frequency generation spectroscopy S Alamdari, SJ Roeters, TW Golbek, L Schmüser, T Weidner, ... Langmuir 36 (40), 11855-11865, 2020 | 44 | 2020 |
| MARTINI-compatible coarse-grained model for the mesoscale simulation of peptoids M Zhao, J Sampath, S Alamdari, G Shen, CL Chen, CJ Mundy, ... The Journal of Physical Chemistry B 124 (36), 7745-7764, 2020 | 44 | 2020 |
| Sequence–structure–binding relationships reveal adhesion behavior of the Car9 solid-binding peptide: an integrated experimental and simulation study B Hellner, S Alamdari, H Pyles, S Zhang, A Prakash, KG Sprenger, ... Journal of the American Chemical Society 142 (5), 2355-2363, 2020 | 31 | 2020 |
| Hierarchical self-assembly pathways of peptoid helices and sheets M Zhao, KJ Lachowski, S Zhang, S Alamdari, J Sampath, P Mu, CJ Mundy, ... Biomacromolecules 23 (3), 992-1008, 2022 | 30 | 2022 |
| Ice-binding site of surface-bound type III antifreeze protein partially decoupled from water D Verreault, S Alamdari, SJ Roeters, R Pandey, J Pfaendtner, T Weidner Physical chemistry chemical physics 20 (42), 26926-26933, 2018 | 24 | 2018 |
| Closing the gap between modeling and experiments in the self-assembly of biomolecules at interfaces and in solution J Sampath, S Alamdari, J Pfaendtner Chemistry of Materials 32 (19), 8043-8059, 2020 | 16 | 2020 |
| Enhanced Activity and Stability of Acidothermus cellulolyticus Endoglucanase 1 in Ionic Liquids via Engineering Active Site Residues and Non-Native Disulfide … S Summers, C Kraft, S Alamdari, J Pfaendtner, JL Kaar ACS Sustainable Chemistry & Engineering 8 (30), 11299-11307, 2020 | 16 | 2020 |
| Impact of glutamate carboxylation in the adsorption of the α-1 domain of osteocalcin to hydroxyapatite and titania S Alamdari, J Pfaendtner Molecular systems design & engineering 5 (3), 620-631, 2020 | 13 | 2020 |
| Computational and experimental determination of the properties, structure, and stability of peptoid nanosheets and nanotubes M Zhao, S Zhang, R Zheng, S Alamdari, CJ Mundy, J Pfaendtner, ... Biomacromolecules 24 (6), 2618-2632, 2023 | 10 | 2023 |
| DiffCapAnalyzer: a python package for quantitative analysis of total differential capacity data NL Thompson, TA Cohen, S Alamdari, CW Hsu, GA Williamson, ... Journal of Open Source Software 5 (54), 2624, 2020 | 9 | 2020 |
| Origins of Conformational Heterogeneity in Peptoid Helices Formed by Chiral N-1-Phenylethyl Sidechains S Alamdari, J Pfaendtner The Journal of Physical Chemistry B 127 (27), 6163-6170, 2023 | 8 | 2023 |
| Thermodynamic Basis for the Stabilization of Helical Peptoids by Chiral Sidechains S Alamdari, K Torkelson, X Wang, CL Chen, AL Ferguson, J Pfaendtner The Journal of Physical Chemistry B 127 (27), 6171-6183, 2023 | 6 | 2023 |
| Peptide Mimic of the Marine Sponge Protein Silicatein Fabricates Ultrathin Nanosheets of Silicon Dioxide and Titanium Dioxide K Strunge, N Hoinkis, H Lutz, S Alamdari, SJ Roeters, H Lu, J Pfaendtner, ... Langmuir 38 (26), 8087-8093, 2022 | 4 | 2022 |
| Efficient Sampling of High-Dimensional Free Energy Landscapes: A Review of Parallel Bias Metadynamics S Alamdari, J Sampath, A Prakash, LD Gibson, J Pfaendtner Foundations of Molecular Modeling and Simulation: Select Papers from FOMMS …, 2021 | 3 | 2021 |
| Towards deep learning sequence-structure co-generation for protein design C Wang, S Alamdari, C Domingo-Enrich, A Amini, KK Yang arXiv preprint arXiv:2410.01773, 2024 | 2 | 2024 |
| Substitution of distal and active site residues reduces product inhibition of E1 from Acidothermus Cellulolyticus SR Summers, S Alamdari, CJ Kraft, R Brunecky, J Pfaendtner, JL Kaar Protein Engineering, Design and Selection 34, gzab031, 2021 | 2 | 2021 |