| Longitudinal analysis reveals age-related changes in the T cell receptor repertoire of human T cell subsets X Sun, T Nguyen, A Achour, A Ko, J Cifello, C Ling, J Sharma, T Hiroi, ... The Journal of clinical investigation 132 (17), 2022 | 57 | 2022 |
| Heterogeneity and transcriptome changes of human CD8+ T cells across nine decades of life J Lu, R Ahmad, T Nguyen, J Cifello, H Hemani, J Li, J Chen, S Li, J Wang, ... Nature communications 13 (1), 5128, 2022 | 36 | 2022 |
| Scalable approaches for functional analyses of whole-genome sequencing non-coding variants PP Kuksa, E Greenfest-Allen, J Cifello, M Ionita, H Wang, H Nicaretta, ... Human Molecular Genetics 31 (R1), R62-R72, 2022 | 13 | 2022 |
| NIAGADS Alzheimer's GenomicsDB: A resource for exploring Alzheimer's disease genetic and genomic knowledge E Greenfest‐Allen, O Valladares, PP Kuksa, P Gangadharan, WP Lee, ... Alzheimer's & Dementia 20 (2), 1123-1136, 2024 | 12 | 2024 |
| SARS-CoV-2 infection establishes a stable and age-independent CD8+ T cell response against a dominant nucleocapsid epitope using restricted T cell receptors C Choy, J Chen, J Li, DT Gallagher, J Lu, D Wu, A Zou, H Hemani, ... Nature Communications 14 (1), 6725, 2023 | 9 | 2023 |
| Lysine methyltransferase Kmt2d regulates naive CD8+ T cell activation-induced survival J Kim, T Nguyen, J Cifello, R Ahmad, Y Zhang, Q Yang, JE Lee, X Li, ... Frontiers in Immunology 13, 1095140, 2023 | 5 | 2023 |
| NIAGADS: A Comprehensive National Data Repository for Alzheimer’s Disease and Related Dementia Genetics and Genomics Research A Kuzma, O Valladares, E Greenfest-Allen, H Nicaretta, M Kirsch, Y Ren, ... medRxiv, 2024 | 1 | 2024 |
| hipFG: high-throughput harmonization and integration pipeline for functional genomics data J Cifello, PP Kuksa, N Saravanan, O Valladares, LS Wang, YY Leung Bioinformatics 39 (11), btad673, 2023 | 1 | 2023 |
| Variant‐gene pair in silico analyses and functional validation of LOAD GWAS loci in human brain‐relevant cell types identify EGFR as a target gene for potential drug repurposing YY Leung, PP Kuksa, J Cifello, E Greenfest‐Allen, L Boateng, S Laub, ... Alzheimer's & Dementia 20 (Suppl 1), e087633, 2025 | | 2025 |
| NIA Genetics of Alzheimer’s Disease Data Storage Site (NIAGADS) N Saravanan, AB Kuzma, O Valladares, HI Nicaretta, J Manuel, ... Alzheimer's & Dementia 20 (Suppl 1), e089040, 2025 | | 2025 |
| Basic Science and Pathogenesis PP Kuksa, L Carter, J Cifello, YY Leung, LS Wang Alzheimer's & dementia: the journal of the Alzheimer's Association 20, e086500, 2024 | | 2024 |
| Multi‐omic cell type‐level inference of mechanisms underlying non‐coding genetic variants for Alzheimer’s disease PP Kuksa, L Carter, J Cifello, YY Leung, LS Wang Alzheimer's & Dementia 20, e086500, 2024 | | 2024 |
| Basic Science and Pathogenesis J Cifello, PP Kuksa, LS Wang, YY Leung Alzheimer's & dementia: the journal of the Alzheimer's Association 20, e089276, 2024 | | 2024 |
| Basic Science and Pathogenesis N Saravanan, AB Kuzma, O Valladares, HI Nicaretta, J Manuel, ... Alzheimer's & dementia: the journal of the Alzheimer's Association 20, e089040, 2024 | | 2024 |
| 943 variants identified synthesizing chromatin conformation capture and quantitative trait loci with results from the Alzheimer’s Disease Variant Portal study J Cifello, PP Kuksa, LS Wang, YY Leung Alzheimer's & Dementia 20, e089276, 2024 | | 2024 |
| BTS: scalable Bayesian Tissue Score for prioritizing GWAS variants and their functional contexts across omics data PP Kuksa, M Ionita, L Carter, J Cifello, K Clark, O Valladares, YY Leung, ... bioRxiv, 2024.10. 30.621077, 2024 | | 2024 |
| CHARMER: detecting and harmonizing high-confidence chromatin interactions across tissues and Hi-C protocols S Cole, PP Kuksa, J Cifello, O Valladares, YY Leung, LS Wang bioRxiv, 2024.11. 25.625258, 2024 | | 2024 |
| NIA Genetics of Alzheimer’s Disease Data Storage Site (NIAGADS): 2023 Update HI Nicaretta, AB Kuzma, O Valladares, J Manuel, E Greenfest‐Allen, ... Alzheimer's & Dementia 19, e074910, 2023 | | 2023 |
| Longitudinal somatic mutation analysis of individual human CD8+ T cells by a UMI-based single cell mutation detection (USCMD) method H Hemani, R Ahmad, J Cifello, S Li, J Li, J Lu, M Ellabaan, N Weng The Journal of Immunology 210 (Supplement_1), 251.07-251.07, 2023 | | 2023 |
| Langevin dynamics simulation of protein dynamics in nanopores at microsecond timescales JP Mahalik, J Cifello, M Muthukumar bioRxiv, 2021.06. 21.449278, 2021 | | 2021 |
